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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027561 through 18771 annotations produced 1 hits



(CG18659):

Annotation Number : CG18659
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027561
Gbrowse : chr2R:5010805-5019486 (-) // 100.0 //
Probeset : 1629030_a_at
Accessions : protein= NP_610458; /// NP_665880;, nucleotide= NM_136614; /// NM_145873;
Interpro : 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferre
FlyMine data for FBgn0027561.
BDGP gene expression has embryonic in situ data for BcDNA:GH08789: 4 pix of staining in 1 body parts.
Homophila reports that CG18659 is a close match (1e-14) to human gene CMT4B2;MTMR13;SBF2 (NP_112224), a gene associated with Charcot-Marie-Tooth disease, type 4B2, 604563 (3).
BioGrid reports that CG18659 interacts with CG18810 .
VDRC has 1 RNAi stocks for FBgn0027561 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain242 54 of 4 2.00Up
Head103 24 of 4 0.90None
Eye97 54 of 4 0.82None
Thoracicoabdominal ganglion250 84 of 4 2.10Up
Salivary gland70 44 of 4 0.59Down
Crop106 54 of 4 0.90None
Midgut64 44 of 4 0.50Down
Tubule94 44 of 4 0.80Down
Hindgut81 64 of 4 0.70Down
Heart99 24 of 4 0.83None
Fat body69 94 of 4 0.58Down
Ovary246 94 of 4 2.10Up
Testis368 144 of 4 3.10Up
Male accessory glands107 114 of 4 0.90None
Virgin spermatheca38 24 of 4 0.32Down
Mated spermatheca35 24 of 4 0.30Down
Adult carcass87 64 of 4 0.70Down
Larval CNS121 184 of 4 1.02None
Larval Salivary gland55 14 of 4 0.46Down
Larval midgut84 34 of 4 0.70Down
Larval tubule106 34 of 4 0.90None
Larval hindgut133 44 of 4 1.12None
Larval fat body280 184 of 4 2.30Up
Larval trachea78 114 of 4 0.66Down
Larval carcass90 44 of 4 0.75Down
S2 cells (growing)369 184 of 4 3.09Up
Whole fly119 94 of 4

Looking for FBgn0027561. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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