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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027562 through 18771 annotations produced 1 hits



(CG10345):

Annotation Number : CG10345
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027562
Gbrowse : chr3R:12422794-12430510 (-) // 100.0 //
Probeset : 1637198_at
Accessions : protein= NP_650563;, nucleotide= NM_142306;
Pathway : 0005887 // integral to plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electr
Interpro : 0005044 // scavenger receptor activity // non-traceable author statement
FlyMine data for FBgn0027562.
Homophila reports that CG10345 is a close match (2e-32) to human gene CD36;CHDS7 (NP_001001548), a gene associated with Platelet glycoprotein IV deficiency, 608404 (3);[Macrothrombocytopenia] (1);{Coronary heart disease, susceptibility to, 7}, 610938 (3);{Malaria, cerebral, reduced risk of}, 611162 (3);{Malaria, cerebral, susceptibility to}, 611162 (3).
VDRC has 3 RNAi stocks for FBgn0027562 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 11 of 4 0.10Down
Head576 ± 374 of 4 5.20Up
Eye270 ± 254 of 4 2.43Up
Thoracicoabdominal ganglion5 ± 20 of 4 0.00Down
Salivary gland17 ± 50 of 4 0.16Down
Crop709 ± 704 of 4 6.40Up
Midgut18 ± 22 of 4 0.20Down
Tubule9 ± 21 of 4 0.10Down
Hindgut253 ± 154 of 4 2.30Up
Heart19 ± 34 of 4 0.18Down
Fat body13 ± 42 of 4 0.12Down
Ovary0 ± 00 of 4 0.00Down
Testis46 ± 34 of 4 0.40Down
Male accessory glands3 ± 00 of 4 0.00Down
Virgin spermatheca4 ± 10 of 4 0.04Down
Mated spermatheca4 ± 20 of 4 0.04Down
Adult carcass468 ± 294 of 4 4.20Up
Larval CNS3 ± 10 of 4 0.03Down
Larval Salivary gland44 ± 54 of 4 0.40Down
Larval midgut5 ± 20 of 4 0.05Down
Larval tubule4 ± 10 of 4 0.00Down
Larval hindgut52 ± 64 of 4 0.47Down
Larval fat body8 ± 30 of 4 0.10Down
Larval trachea158 ± 204 of 4 1.42Up
Larval carcass5 ± 30 of 4 0.05Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly111 ± 114 of 4

Looking for FBgn0027562. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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