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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0027563 through 18771 annotations produced 1 hits


/// /// /// /// /// /// /// /// /// /// /// /// /// /// /// (CG9631 /// DameCG9631 /// DborCG9631 /// DezoCG9631 /// DflaCG9631 /// DkanCG9631 /// DlacCG9631 /// DlitCG9631 /// DlumCG9631 /// DmauCG9631 /// DmonCG9631 /// DnovCG9631 /// DoreCG9631 /// DteiCG9631 /// DtexCG9631 /// DvirCG9631):

Annotation Number : CG9631
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027563
Gbrowse : chr3R:10050819-10052468 (-) // 100.0 //
Probeset : 1633224_at
Accessions : protein= NP_650345;, nucleotide= NM_142088;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004175 // endopeptidase activity // non-tracea
FlyMine data for FBgn0027563.
BDGP gene expression has embryonic in situ data for BcDNA:GH08420: 4 pix of staining in 1 body parts.
Homophila reports that CG9631 is a close match (8e-11) to human gene BSSP3;MRT1;PRSS12 (NP_003610), a gene associated with Mental retardation, autosomal recessive 1, 249500 (3).
VDRC has 3 RNAi stocks for FBgn0027563 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 ± 02 of 4 0.20Down
Head384 ± 184 of 4 5.50Up
Eye264 ± 254 of 4 3.79Up
Thoracicoabdominal ganglion7 ± 00 of 4 0.10Down
Salivary gland618 ± 164 of 4 8.88Up
Crop640 ± 244 of 4 9.20Up
Midgut11 ± 00 of 4 0.20Down
Tubule11 ± 21 of 4 0.20Down
Hindgut144 ± 74 of 4 2.10Up
Heart207 ± 184 of 4 2.99Up
Fat body377 ± 254 of 4 5.42Up
Ovary6 ± 10 of 4 0.10Down
Testis11 ± 12 of 4 0.20Down
Male accessory glands9 ± 30 of 4 0.10Down
Virgin spermatheca358 ± 144 of 4 5.15Up
Mated spermatheca313 ± 204 of 4 4.50Up
Adult carcass449 ± 144 of 4 6.40Up
Larval CNS3 ± 10 of 4 0.05Down
Larval Salivary gland6 ± 20 of 4 0.09Down
Larval midgut8 ± 10 of 4 0.12Down
Larval tubule7 ± 11 of 4 0.10Down
Larval hindgut6 ± 10 of 4 0.09Down
Larval fat body95 ± 34 of 4 1.40Up
Larval trachea5 ± 70 of 4 0.07Down
Larval carcass11 ± 31 of 4 0.16Down
S2 cells (growing)8 ± 11 of 4 0.11Down
Whole fly69 ± 74 of 4

Looking for FBgn0027563. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime