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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027568 through 18771 annotations produced 1 hits



(CG5366):

Annotation Number : CG5366
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027568
Gbrowse : chr2L:10358161-10362703 (-) // 100.0 //
Probeset : 1641608_at
Accessions : protein= NP_609389;, nucleotide= NM_135545;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0008134 // transcription factor binding // inferred from s
FlyMine data for FBgn0027568.
TRiP has 3 RNAi stocks for FBgn0027568 available for purchase.
VDRC has 3 RNAi stocks for FBgn0027568 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain144 24 of 4 0.90None
Head98 44 of 4 0.60Down
Eye99 04 of 4 0.59Down
Thoracicoabdominal ganglion140 94 of 4 0.80None
Salivary gland319 54 of 4 1.89Up
Crop133 44 of 4 0.80Down
Midgut87 74 of 4 0.50Down
Tubule173 44 of 4 1.00None
Hindgut125 24 of 4 0.70Down
Heart104 64 of 4 0.62Down
Fat body99 54 of 4 0.59Down
Ovary237 44 of 4 1.40Up
Testis409 64 of 4 2.40Up
Male accessory glands172 64 of 4 1.00None
Virgin spermatheca129 44 of 4 0.77Down
Mated spermatheca149 24 of 4 0.88None
Adult carcass73 64 of 4 0.40Down
Larval CNS326 174 of 4 1.94Up
Larval Salivary gland192 44 of 4 1.14None
Larval midgut102 44 of 4 0.61Down
Larval tubule198 34 of 4 1.20Up
Larval hindgut182 64 of 4 1.08None
Larval fat body186 84 of 4 1.10None
Larval trachea210 144 of 4 1.25Up
Larval carcass172 34 of 4 1.02None
S2 cells (growing)214 24 of 4 1.27Up
Whole fly168 94 of 4

Looking for FBgn0027568. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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