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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027569 through 18771 annotations produced 1 hits



ceramide transfer protein (cert):

Annotation Number : CG7207
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027569
Gbrowse : chr3L:8275624-8282931 (-) // 99.84 //
Probeset : 1626968_at
Accessions : protein= NP_648199;, nucleotide= NM_139942;
Interpro : 0004674 // protein serine/threonine kinase activity // inferred from sequence or structural similarity /// 0005515 // pr
FlyMine data for FBgn0027569.
BDGP gene expression has embryonic in situ data for BcDNA:GH07688: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0027569 available for purchase.
VDRC has 2 RNAi stocks for FBgn0027569 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain374 ± 24 of 4 1.40Up
Head272 ± 64 of 4 1.10None
Eye202 ± 74 of 4 0.78Down
Thoracicoabdominal ganglion431 ± 114 of 4 1.70Up
Salivary gland487 ± 214 of 4 1.88Up
Crop286 ± 94 of 4 1.10None
Midgut645 ± 204 of 4 2.50Up
Tubule539 ± 74 of 4 2.10Up
Hindgut258 ± 74 of 4 1.00None
Heart460 ± 424 of 4 1.78Up
Fat body430 ± 164 of 4 1.66Up
Ovary442 ± 84 of 4 1.70Up
Testis151 ± 54 of 4 0.60Down
Male accessory glands1047 ± 334 of 4 4.00Up
Virgin spermatheca435 ± 184 of 4 1.68Up
Mated spermatheca372 ± 224 of 4 1.44Up
Adult carcass269 ± 104 of 4 1.00None
Larval CNS647 ± 704 of 4 2.50Up
Larval Salivary gland240 ± 334 of 4 0.93None
Larval midgut886 ± 544 of 4 3.42Up
Larval tubule888 ± 554 of 4 3.40Up
Larval hindgut754 ± 784 of 4 2.91Up
Larval fat body658 ± 484 of 4 2.50Up
Larval trachea792 ± 1914 of 4 3.06Up
Larval carcass278 ± 64 of 4 1.08None
S2 cells (growing)738 ± 194 of 4 2.85Up
Whole fly258 ± 174 of 4

Looking for FBgn0027569. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime