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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027572 through 18771 annotations produced 1 hits



(CG5009):

Annotation Number : CG5009
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027572
Gbrowse : chr2R:13648437-13652065 (+) // 100.0 //
Probeset : 1624756_at
Accessions : protein= NP_611264;, nucleotide= NM_137420;
Pathway : 0005777 // peroxisome // inferred from electronic annotation /// 0005777 // peroxisome // inferred from sequence or stru
Interpro : "0003995 // acyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0003997 // acyl-CoA oxidase activ
FlyMine data for FBgn0027572.
Homophila reports that CG5009 is a close match (1e-156) to human gene ACOX;ACOX1;SCOX (NP_009223), a gene associated with Peroxisomal acyl-CoA oxidase deficiency, 264470 (3).
BioGrid reports that CG5009 interacts with CG5272 CG5271 CG5502 CG5792 CG7283 CG7757 CG8216 CG8900 CG9025 .
VDRC has 2 RNAi stocks for FBgn0027572 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain118 ± 54 of 4 0.70Down
Head413 ± 224 of 4 2.50Up
Eye306 ± 44 of 4 1.87Up
Thoracicoabdominal ganglion125 ± 24 of 4 0.80None
Salivary gland116 ± 54 of 4 0.71Down
Crop1059 ± 304 of 4 6.50Up
Midgut364 ± 254 of 4 2.20Up
Tubule293 ± 354 of 4 1.80Up
Hindgut834 ± 134 of 4 5.10Up
Heart345 ± 134 of 4 2.11Up
Fat body541 ± 404 of 4 3.30Up
Ovary99 ± 14 of 4 0.60Down
Testis63 ± 34 of 4 0.40Down
Male accessory glands80 ± 84 of 4 0.50Down
Virgin spermatheca891 ± 324 of 4 5.44Up
Mated spermatheca669 ± 514 of 4 4.09Up
Adult carcass452 ± 114 of 4 2.80Up
Larval CNS78 ± 64 of 4 0.48Down
Larval Salivary gland56 ± 24 of 4 0.35Down
Larval midgut474 ± 174 of 4 2.90Up
Larval tubule584 ± 324 of 4 3.60Up
Larval hindgut231 ± 94 of 4 1.42Up
Larval fat body290 ± 274 of 4 1.80Up
Larval trachea339 ± 314 of 4 2.07Up
Larval carcass262 ± 124 of 4 1.60Up
S2 cells (growing)231 ± 54 of 4 1.41Up
Whole fly163 ± 124 of 4

Looking for FBgn0027572. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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