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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027575 through 18771 annotations produced 1 hits



metabotropic GABA-B receptor subtype 2 (GABA-B-R2):

Annotation Number : CG6706
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027575
Gbrowse : chr3R:17596054-17601562 (-) // 100.0 //
Probeset : 1637420_a_at
Accessions : protein= NP_524438; /// NP_732658;, nucleotide= NM_079714; /// NM_169968;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0027575.
Homophila reports that CG6706 is a close match (2e-168) to human gene GPR51;GABBR2 (NP_005449), a gene associated with {Nicotine dependence, protection against}, 188890 (3);{Nicotine dependence, susceptibility to}, 188890 (3).
BioGrid reports that CG6706 interacts with CG7102 CG8907 .
TRiP has 1 RNAi stocks for FBgn0027575 available for purchase.
VDRC has 3 RNAi stocks for FBgn0027575 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain582 204 of 426.90Up
Head103 54 of 4 4.80Up
Eye52 54 of 4 2.41Up
Thoracicoabdominal ganglion510 74 of 423.60Up
Salivary gland19 61 of 4 0.91None
Crop9 02 of 4 0.40Down
Midgut9 10 of 4 0.40Down
Tubule8 01 of 4 0.40Down
Hindgut11 14 of 4 0.50Down
Heart3 10 of 4 0.18Down
Fat body18 41 of 4 0.87None
Ovary2 00 of 4 0.10Down
Testis11 04 of 4 0.50Down
Male accessory glands11 31 of 4 0.50Down
Virgin spermatheca14 13 of 4 0.65Down
Mated spermatheca12 22 of 4 0.55Down
Adult carcass20 22 of 4 0.90None
Larval CNS274 124 of 412.68Up
Larval Salivary gland10 12 of 4 0.50Down
Larval midgut5 10 of 4 0.25Down
Larval tubule7 10 of 4 0.30Down
Larval hindgut8 03 of 4 0.41Down
Larval fat body9 00 of 4 0.50Down
Larval trachea7 22 of 4 0.34Down
Larval carcass12 04 of 4 0.56Down
S2 cells (growing)8 13 of 4 0.42Down
Whole fly21 24 of 4

Looking for FBgn0027575. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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