Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027580 through 18771 annotations produced 2 hits



pyruvate carboxylase (CG1516):

Annotation Number : CG1516
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027580
Gbrowse : chr2R:5740061-5743715 (-) // 100.0 //
Probeset : 1640629_s_at
Accessions : protein= NP_001163103; /// NP_610527; /// NP_724837; /// NP_724838; /// NP_724839; /// NP_724840; /// NP_724841; /// NP_724842; /// NP_724843; /// NP_724844;, nucleotide= NM_001169632; /// NM_136683; /// NM_165705; /// NM_165706; /// NM_165707; /// NM_165708; /// NM_165709; /// NM_165710; /// NM_165711; /// NM_165712;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from sequenc
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004736 // pyruvate carboxylase activity // inf
FlyMine data for FBgn0027580.
Homophila reports that CG1516 is a close match (1e-100) to human gene MCCC1;MCCA (NP_064551), a gene associated with 3-Methylcrotonyl-CoA carboxylase 1 deficiency, 210200 (3).
BioGrid reports that CG1516 interacts with CG2224 .
VDRC has 3 RNAi stocks for FBgn0027580 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain45 ± 24 of 4 0.40Down
Head214 ± 324 of 4 1.80None
Eye17 ± 34 of 4 0.14Down
Thoracicoabdominal ganglion47 ± 74 of 4 0.40Down
Salivary gland103 ± 94 of 4 0.85None
Crop348 ± 414 of 4 2.90Up
Midgut83 ± 34 of 4 0.70None
Tubule45 ± 24 of 4 0.40Down
Hindgut155 ± 64 of 4 1.30None
Heart54 ± 54 of 4 0.44Down
Fat body458 ± 3174 of 4 3.76None
Ovary86 ± 64 of 4 0.70None
Testis103 ± 104 of 4 0.90None
Male accessory glands14 ± 11 of 4 0.10Down
Virgin spermatheca25 ± 34 of 4 0.21Down
Mated spermatheca27 ± 14 of 4 0.23Down
Adult carcass471 ± 234 of 4 3.90Up
Larval CNS55 ± 64 of 4 0.46Down
Larval Salivary gland87 ± 74 of 4 0.72None
Larval midgut76 ± 54 of 4 0.63None
Larval tubule80 ± 74 of 4 0.70None
Larval hindgut113 ± 134 of 4 0.93None
Larval fat body803 ± 724 of 4 6.60Up
Larval trachea67 ± 64 of 4 0.55Down
Larval carcass158 ± 404 of 4 1.30None
S2 cells (growing)163 ± 144 of 4 1.34None
Whole fly121 ± 154 of 4



pyruvate carboxylase (CG1516):

Annotation Number : CG1516
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027580
Gbrowse : chr2R:5738212-5749048 (-) // 100.0 //
Probeset : 1639255_s_at
Accessions : protein= NP_001163103; /// NP_610527; /// NP_724837; /// NP_724838; /// NP_724839; /// NP_724840; /// NP_724841; /// NP_724842; /// NP_724843; /// NP_724844;, nucleotide= NM_001169632; /// NM_136683; /// NM_165705; /// NM_165706; /// NM_165707; /// NM_165708; /// NM_165709; /// NM_165710; /// NM_165711; /// NM_165712;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from sequenc
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004736 // pyruvate carboxylase activity // inf
FlyMine data for FBgn0027580.
Homophila reports that CG1516 is a close match (1e-100) to human gene MCCC1;MCCA (NP_064551), a gene associated with 3-Methylcrotonyl-CoA carboxylase 1 deficiency, 210200 (3).
BioGrid reports that CG1516 interacts with CG2224 .
VDRC has 3 RNAi stocks for FBgn0027580 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain542 ± 44 of 4 0.40Down
Head2406 ± 1564 of 4 1.70Up
Eye1633 ± 1844 of 4 1.17None
Thoracicoabdominal ganglion647 ± 114 of 4 0.50Down
Salivary gland1414 ± 414 of 4 1.01None
Crop3152 ± 1554 of 4 2.30Up
Midgut1403 ± 504 of 4 1.00None
Tubule1886 ± 394 of 4 1.40Up
Hindgut2166 ± 494 of 4 1.60Up
Heart3694 ± 924 of 4 2.65Up
Fat body4401 ± 4334 of 4 3.15Up
Ovary970 ± 264 of 4 0.70Down
Testis494 ± 124 of 4 0.40Down
Male accessory glands42 ± 44 of 4 0.00Down
Virgin spermatheca3763 ± 1174 of 4 2.70Up
Mated spermatheca3876 ± 1374 of 4 2.78Up
Adult carcass3175 ± 1214 of 4 2.30Up
Larval CNS951 ± 684 of 4 0.68Down
Larval Salivary gland1571 ± 864 of 4 1.13None
Larval midgut1315 ± 464 of 4 0.94None
Larval tubule852 ± 544 of 4 0.60Down
Larval hindgut1661 ± 354 of 4 1.19None
Larval fat body4405 ± 4354 of 4 3.20Up
Larval trachea3447 ± 1824 of 4 2.47Up
Larval carcass2516 ± 954 of 4 1.80Up
S2 cells (growing)596 ± 334 of 4 0.43Down
Whole fly1395 ± 884 of 4

Looking for FBgn0027580. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime