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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027581 through 18771 annotations produced 1 hits



(CG6191):

Annotation Number : CG6191
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027581
Gbrowse : chr2R:9468090-9480841 (-) // 99.42 //
Probeset : 1625281_at
Accessions : protein= NP_610890;, nucleotide= NM_137046;
Pathway : engulfment // inferred from mutant phenotype /// 0051302 // regulation of cell division // inferred from electronic ann
FlyMine data for FBgn0027581.
VDRC has 2 RNAi stocks for FBgn0027581 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain489 154 of 4 3.70Up
Head195 74 of 4 1.50Up
Eye599 424 of 4 4.51Up
Thoracicoabdominal ganglion392 124 of 4 3.00Up
Salivary gland138 44 of 4 1.05None
Crop136 84 of 4 1.00None
Midgut249 154 of 4 1.90Up
Tubule358 284 of 4 2.70Up
Hindgut117 24 of 4 0.90None
Heart201 104 of 4 1.52Up
Fat body106 124 of 4 0.80None
Ovary166 104 of 4 1.30None
Testis39 44 of 4 0.30Down
Male accessory glands236 184 of 4 1.80Up
Virgin spermatheca109 104 of 4 0.82None
Mated spermatheca100 74 of 4 0.75None
Adult carcass124 54 of 4 0.90None
Larval CNS142 234 of 4 1.08None
Larval Salivary gland71 24 of 4 0.54Down
Larval midgut115 94 of 4 0.87None
Larval tubule1359 444 of 410.20Up
Larval hindgut160 54 of 4 1.20None
Larval fat body243 114 of 4 1.80Up
Larval trachea253 314 of 4 1.91Up
Larval carcass125 44 of 4 0.94None
S2 cells (growing)147 34 of 4 1.11None
Whole fly132 114 of 4

Looking for FBgn0027581. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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