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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027585 through 18771 annotations produced 2 hits



(CG8740):

Annotation Number : CG8740
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027585
Gbrowse : chr2R:4623323-4647095 (+) // 100.0 //
Probeset : 1628426_s_at
Accessions : protein= NP_001137621; /// NP_610411; /// NP_724712; /// NP_724713;, nucleotide= NM_001144149; /// NM_136567; /// NM_165626; /// NM_165627;
FlyMine data for FBgn0027585.
BDGP gene expression has embryonic in situ data for BcDNA:GH05582: 36 pix of staining in 9 body parts.
VDRC has 3 RNAi stocks for FBgn0027585 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain81 34 of 4 1.10None
Head232 124 of 4 3.00Up
Eye487 204 of 4 6.32Up
Thoracicoabdominal ganglion119 24 of 4 1.50Up
Salivary gland878 184 of 411.40Up
Crop478 134 of 4 6.20Up
Midgut25 11 of 4 0.30Down
Tubule15 10 of 4 0.20Down
Hindgut502 194 of 4 6.50Up
Heart33 13 of 4 0.43Down
Fat body29 80 of 4 0.39Down
Ovary11 01 of 4 0.20Down
Testis33 24 of 4 0.40Down
Male accessory glands40 24 of 4 0.50Down
Virgin spermatheca72 34 of 4 0.94None
Mated spermatheca89 64 of 4 1.16None
Adult carcass271 214 of 4 3.50Up
Larval CNS24 54 of 4 0.32Down
Larval Salivary gland94 94 of 4 1.23None
Larval midgut35 33 of 4 0.47Down
Larval tubule6 20 of 4 0.10Down
Larval hindgut275 254 of 4 3.58Up
Larval fat body15 20 of 4 0.20Down
Larval trachea735 844 of 4 9.54Up
Larval carcass418 574 of 4 5.43Up
S2 cells (growing)2 00 of 4 0.03Down
Whole fly77 84 of 4



(CG8740):

Annotation Number : HDC05276
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027585
Gbrowse : chr2R:4633544-4636930 (+) // 100.0 //
Probeset : 1623054_at
Accessions : protein= NP_001137621; /// NP_610411; /// NP_724712; /// NP_724713;, nucleotide= NM_001144149; /// NM_136567; /// NM_165626; /// NM_165627;
FlyMine data for FBgn0027585.
BDGP gene expression has embryonic in situ data for BcDNA:GH05582: 36 pix of staining in 9 body parts.
VDRC has 3 RNAi stocks for FBgn0027585 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 10 of 4 2.70None
Head2 10 of 4 1.30None
Eye4 00 of 4 1.98None
Thoracicoabdominal ganglion4 10 of 4 2.10None
Salivary gland18 21 of 4 8.60Up
Crop7 30 of 4 3.40None
Midgut5 10 of 4 2.70None
Tubule7 10 of 4 3.30Up
Hindgut6 10 of 4 3.00None
Heart2 00 of 4 1.15None
Fat body3 30 of 4 1.81None
Ovary3 00 of 4 1.50None
Testis4 10 of 4 1.90None
Male accessory glands10 10 of 4 4.80Up
Virgin spermatheca5 20 of 4 2.56None
Mated spermatheca5 10 of 4 2.67None
Adult carcass5 10 of 4 2.70None
Larval CNS5 30 of 4 2.64None
Larval Salivary gland2 10 of 4 1.36None
Larval midgut9 20 of 4 4.26Up
Larval tubule4 10 of 4 2.00None
Larval hindgut5 10 of 4 2.40None
Larval fat body10 30 of 4 5.00None
Larval trachea8 30 of 4 4.12Up
Larval carcass6 10 of 4 3.00None
S2 cells (growing)4 00 of 4 2.06None
Whole fly2 00 of 4

Looking for FBgn0027585. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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