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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027587 through 18771 annotations produced 1 hits



(CG7028):

Annotation Number : CG7028
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027587
Gbrowse : chr3L:207883-211462 (-) // 100.0 //
Probeset : 1640619_at
Accessions : protein= NP_612010;, nucleotide= NM_138166;
Pathway : via spliceosome // inferred by curator /// 0006468 // protein phosphorylation // inferred from electronic annotation //
Interpro : 0071011 // precatalytic spliceosome // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferre
FlyMine data for FBgn0027587.
BDGP gene expression has embryonic in situ data for BcDNA:GH04978: 2 pix of staining in 1 body parts.
Homophila reports that CG7028 is a close match (2e-15) to human gene CDK4;CMM3 (NP_000066), a gene associated with Melanoma, 609048 (3).
BioGrid reports that CG7028 interacts with CG3018 CG33553 .
TRiP has 1 RNAi stocks for FBgn0027587 available for purchase.
VDRC has 3 RNAi stocks for FBgn0027587 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain242 44 of 4 1.30Up
Head142 64 of 4 0.80None
Eye107 64 of 4 0.59Down
Thoracicoabdominal ganglion198 54 of 4 1.10None
Salivary gland181 94 of 4 0.99None
Crop182 64 of 4 1.00None
Midgut126 54 of 4 0.70Down
Tubule170 44 of 4 0.90Down
Hindgut125 54 of 4 0.70Down
Heart116 24 of 4 0.64Down
Fat body141 134 of 4 0.77None
Ovary414 84 of 4 2.30Up
Testis69 24 of 4 0.40Down
Male accessory glands165 94 of 4 0.90None
Virgin spermatheca147 44 of 4 0.81None
Mated spermatheca180 114 of 4 0.99None
Adult carcass120 24 of 4 0.70Down
Larval CNS322 194 of 4 1.77Up
Larval Salivary gland207 44 of 4 1.14None
Larval midgut86 34 of 4 0.47Down
Larval tubule155 24 of 4 0.80None
Larval hindgut127 84 of 4 0.70Down
Larval fat body143 84 of 4 0.80None
Larval trachea205 254 of 4 1.12None
Larval carcass168 134 of 4 0.92None
S2 cells (growing)130 24 of 4 0.71None
Whole fly182 174 of 4

Looking for FBgn0027587. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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