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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027588 through 18771 annotations produced 1 hits



glucosidase II (CG14476):

Annotation Number : CG14476
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027588
Gbrowse : chrX:21471626-21476294 (-) // 100.0 //
Probeset : 1626135_s_at
Accessions : protein= NP_652145; /// NP_728434; /// NP_728435; /// NP_728436; /// NP_728437;, nucleotide= NM_143888; /// NM_167757; /// NM_167758; /// NM_167759; /// NM_167760;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay /// 0017177 // alpha-glucosidase II complex // i
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity
FlyMine data for FBgn0027588.
BDGP gene expression has embryonic in situ data for BcDNA:GH04962: 24 pix of staining in 17 body parts.
Homophila reports that CG14476 is a close match (4e-56) to human gene SI (NP_001032), a gene associated with Sucrase-isomaltase deficiency, congenital, 222900 (3).
BioGrid reports that CG14476 interacts with CG17489 CG4216 CG9875 .
TRiP has 1 RNAi stocks for FBgn0027588 available for purchase.
VDRC has 2 RNAi stocks for FBgn0027588 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1361 434 of 4 2.00Up
Head1002 184 of 4 1.50Up
Eye1450 604 of 4 2.11Up
Thoracicoabdominal ganglion1607 354 of 4 2.30Up
Salivary gland4156 234 of 4 6.04Up
Crop733 74 of 4 1.10Up
Midgut1013 304 of 4 1.50Up
Tubule1198 544 of 4 1.70Up
Hindgut871 134 of 4 1.30Up
Heart729 264 of 4 1.06None
Fat body571 444 of 4 0.83Down
Ovary640 204 of 4 0.90None
Testis644 204 of 4 0.90None
Male accessory glands1758 944 of 4 2.60Up
Virgin spermatheca872 234 of 4 1.27Up
Mated spermatheca744 344 of 4 1.08None
Adult carcass688 144 of 4 1.00None
Larval CNS958 424 of 4 1.39Up
Larval Salivary gland2865 1334 of 4 4.16Up
Larval midgut1172 254 of 4 1.70Up
Larval tubule1809 394 of 4 2.60Up
Larval hindgut1088 234 of 4 1.58Up
Larval fat body822 464 of 4 1.20None
Larval trachea1371 1064 of 4 1.99Up
Larval carcass1117 364 of 4 1.62Up
S2 cells (growing)1220 134 of 4 1.77Up
Whole fly688 124 of 4

Looking for FBgn0027588. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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