FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0027596 through 18771 annotations produced 4 hits

(CG10249):

Annotation Number : HDC06480
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027596
Gbrowse : chr2R:10802080-10804515 (-) // 100.0 //
Probeset : 1641050_s_at
Accessions : protein= NP_001097318; /// NP_001163155; /// NP_611005; /// NP_725426; /// NP_725427;, nucleotide= NM_001103848; /// NM_001169684; /// NM_137161; /// NM_166073; /// NM_166074;
FlyMine data for FBgn0027596.
BDGP gene expression has embryonic in situ data for BcDNA:GH03482: 27 pix of staining in 8 body parts.
TRiP has 1 RNAi stocks for FBgn0027596 available for purchase.
VDRC has 1 RNAi stocks for FBgn0027596 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 0	1 of 4	1.90	None
Head	4 ± 2	0 of 4	1.30	None
Eye	3 ± 1	0 of 4	0.90	None
Thoracicoabdominal ganglion	7 ± 1	1 of 4	2.00	None
Salivary gland	17 ± 0	1 of 4	4.85	Up
Crop	10 ± 1	2 of 4	3.00	Up
Midgut	14 ± 1	2 of 4	4.00	Up
Tubule	6 ± 0	0 of 4	1.90	Up
Hindgut	13 ± 1	4 of 4	3.80	Up
Heart	2 ± 0	0 of 4	0.60	None
Fat body	8 ± 3	0 of 4	2.46	None
Ovary	5 ± 1	0 of 4	1.70	None
Testis	7 ± 0	2 of 4	2.20	Up
Male accessory glands	3 ± 1	0 of 4	0.90	None
Virgin spermatheca	5 ± 1	0 of 4	1.63	None
Mated spermatheca	4 ± 1	0 of 4	1.27	None
Adult carcass	13 ± 2	3 of 4	3.70	Up
Larval CNS	6 ± 2	3 of 4	1.81	None
Larval Salivary gland	17 ± 1	4 of 4	4.94	Up
Larval midgut	11 ± 1	0 of 4	3.09	Up
Larval tubule	9 ± 1	2 of 4	2.60	Up
Larval hindgut	7 ± 0	1 of 4	2.10	None
Larval fat body	8 ± 1	1 of 4	2.40	None
Larval trachea	4 ± 2	0 of 4	1.29	None
Larval carcass	7 ± 1	1 of 4	2.21	None
S2 cells (growing)	3 ± 1	1 of 4	1.07	None
Whole fly	3 ± 1	0 of 4

(CG10249):

Annotation Number : CG10249
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027596
Gbrowse : chr2R:10788979-10799722 (-) // 100.0 //
Probeset : 1623036_a_at
Accessions : protein= NP_001097318; /// NP_001163155; /// NP_611005; /// NP_725426; /// NP_725427;, nucleotide= NM_001103848; /// NM_001169684; /// NM_137161; /// NM_166073; /// NM_166074;
FlyMine data for FBgn0027596.
BDGP gene expression has embryonic in situ data for BcDNA:GH03482: 27 pix of staining in 8 body parts.
Homophila reports that CG10249 is a close match (8e-11) to human gene ANK2;LQT4 (NP_066187), a gene associated with Cardiac arrhythmia, ankyrin-B-related, 600919 (3);Long QT syndrome-4, 600919 (3).
TRiP has 1 RNAi stocks for FBgn0027596 available for purchase.
VDRC has 1 RNAi stocks for FBgn0027596 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	588 ± 7	4 of 4	2.70	Up
Head	334 ± 22	4 of 4	1.60	Up
Eye	282 ± 28	4 of 4	1.32	None
Thoracicoabdominal ganglion	496 ± 12	4 of 4	2.30	Up
Salivary gland	1018 ± 61	4 of 4	4.76	Up
Crop	755 ± 22	4 of 4	3.50	Up
Midgut	174 ± 2	4 of 4	0.80	None
Tubule	560 ± 38	4 of 4	2.60	Up
Hindgut	610 ± 22	4 of 4	2.90	Up
Heart	185 ± 16	4 of 4	0.87	None
Fat body	192 ± 26	4 of 4	0.90	None
Ovary	91 ± 5	4 of 4	0.40	Down
Testis	836 ± 13	4 of 4	3.90	Up
Male accessory glands	108 ± 13	4 of 4	0.50	Down
Virgin spermatheca	457 ± 7	4 of 4	2.14	Up
Mated spermatheca	520 ± 31	4 of 4	2.43	Up
Adult carcass	222 ± 12	4 of 4	1.00	None
Larval CNS	589 ± 88	4 of 4	2.75	Up
Larval Salivary gland	67 ± 9	4 of 4	0.31	Down
Larval midgut	218 ± 14	4 of 4	1.02	None
Larval tubule	108 ± 10	4 of 4	0.50	Down
Larval hindgut	372 ± 30	4 of 4	1.74	Up
Larval fat body	209 ± 49	4 of 4	1.00	None
Larval trachea	1696 ± 289	4 of 4	7.92	Up
Larval carcass	510 ± 20	4 of 4	2.38	Up
S2 cells (growing)	154 ± 2	4 of 4	0.72	Down
Whole fly	214 ± 16	4 of 4

():

Annotation Number : Stencil:2R:9992304:9983934:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr2R:10807713-10816083 (-) // 100.0 //
Probeset : 1626069_at
Accessions : protein= , nucleotide=

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 0	0 of 4	1.70	None
Head	3 ± 0	0 of 4	1.70	None
Eye	1 ± 1	0 of 4	0.86	None
Thoracicoabdominal ganglion	2 ± 0	0 of 4	1.10	None
Salivary gland	7 ± 3	0 of 4	3.81	None
Crop	2 ± 0	0 of 4	1.50	None
Midgut	4 ± 2	0 of 4	2.50	None
Tubule	2 ± 0	0 of 4	1.60	Up
Hindgut	5 ± 1	0 of 4	3.00	None
Heart	2 ± 1	0 of 4	1.41	None
Fat body	4 ± 2	0 of 4	2.60	None
Ovary	0 ± 0	0 of 4	0.40	None
Testis	1 ± 0	0 of 4	0.80	None
Male accessory glands	1 ± 1	0 of 4	0.90	None
Virgin spermatheca	2 ± 1	0 of 4	1.07	None
Mated spermatheca	3 ± 1	0 of 4	2.14	None
Adult carcass	3 ± 1	0 of 4	1.60	None
Larval CNS	1 ± 0	0 of 4	0.59	None
Larval Salivary gland	5 ± 0	0 of 4	3.05	Up
Larval midgut	2 ± 1	0 of 4	1.34	None
Larval tubule	8 ± 2	0 of 4	4.70	Up
Larval hindgut	2 ± 0	0 of 4	1.26	None
Larval fat body	0 ± 0	0 of 4	0.40	None
Larval trachea	1 ± 0	0 of 4	0.90	None
Larval carcass	4 ± 0	0 of 4	2.47	None
S2 cells (growing)	1 ± 0	0 of 4	0.58	None
Whole fly	1 ± 0	0 of 4

(CG10249):

Annotation Number : HDC06480
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027596
Gbrowse : chr2R:10802080-10804515 (-) // 100.0 //
Probeset : 1639449_at
Accessions : protein= NP_001097318; /// NP_001163155; /// NP_611005; /// NP_725426; /// NP_725427;, nucleotide= NM_001103848; /// NM_001169684; /// NM_137161; /// NM_166073; /// NM_166074;
FlyMine data for FBgn0027596.
BDGP gene expression has embryonic in situ data for BcDNA:GH03482: 27 pix of staining in 8 body parts.
TRiP has 1 RNAi stocks for FBgn0027596 available for purchase.
VDRC has 1 RNAi stocks for FBgn0027596 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 2	0 of 4	2.50	None
Head	11 ± 2	0 of 4	5.70	Up
Eye	16 ± 1	0 of 4	8.21	Up
Thoracicoabdominal ganglion	7 ± 2	0 of 4	3.50	None
Salivary gland	2 ± 0	0 of 4	0.98	None
Crop	4 ± 1	0 of 4	2.00	None
Midgut	4 ± 1	0 of 4	2.30	None
Tubule	2 ± 0	0 of 4	1.30	None
Hindgut	2 ± 1	0 of 4	1.30	None
Heart	7 ± 2	0 of 4	3.77	None
Fat body	6 ± 5	0 of 4	3.12	None
Ovary	1 ± 0	0 of 4	0.50	None
Testis	5 ± 1	0 of 4	2.90	None
Male accessory glands	7 ± 3	0 of 4	3.60	None
Virgin spermatheca	7 ± 1	0 of 4	3.64	Up
Mated spermatheca	9 ± 1	0 of 4	4.70	Up
Adult carcass	3 ± 1	0 of 4	1.60	None
Larval CNS	3 ± 1	0 of 4	1.88	None
Larval Salivary gland	3 ± 0	0 of 4	1.94	Up
Larval midgut	2 ± 1	0 of 4	1.38	None
Larval tubule	1 ± 0	0 of 4	0.90	None
Larval hindgut	2 ± 1	0 of 4	1.43	None
Larval fat body	1 ± 0	0 of 4	0.90	None
Larval trachea	8 ± 4	0 of 4	4.14	None
Larval carcass	2 ± 0	0 of 4	1.35	None
S2 cells (growing)	7 ± 1	0 of 4	3.49	Up
Whole fly	2 ± 0	0 of 4

Looking for FBgn0027596. 4 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720