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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027600 through 18771 annotations produced 1 hits



CG4778 (obst-B):

Annotation Number : CG4778
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027600
Gbrowse : chr2L:10032693-10038954 (+) // 100.0 //
Probeset : 1641109_at
Accessions : protein= NP_609339;, nucleotide= NM_135495;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008061 // chitin binding // inferred from electron
FlyMine data for FBgn0027600.
BDGP gene expression has embryonic in situ data for BcDNA:GH02976: 15 pix of staining in 7 body parts.
BioGrid reports that CG4778 interacts with CG7171 CG9429 CG30425 .
VDRC has 3 RNAi stocks for FBgn0027600 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 10 of 4 0.30Down
Head23 24 of 4 1.00None
Eye22 24 of 4 0.93None
Thoracicoabdominal ganglion2 00 of 4 0.10Down
Salivary gland3 20 of 4 0.16Down
Crop9 11 of 4 0.40Down
Midgut12 10 of 4 0.50Down
Tubule5 00 of 4 0.20Down
Hindgut8 40 of 4 0.30Down
Heart4 11 of 4 0.17Down
Fat body11 30 of 4 0.47Down
Ovary14 04 of 4 0.60Down
Testis5 11 of 4 0.20Down
Male accessory glands9 30 of 4 0.40Down
Virgin spermatheca5 10 of 4 0.21Down
Mated spermatheca5 11 of 4 0.23Down
Adult carcass56 64 of 4 2.40Up
Larval CNS15 43 of 4 0.63Down
Larval Salivary gland25 34 of 4 1.05None
Larval midgut28 41 of 4 1.19None
Larval tubule7 00 of 4 0.30Down
Larval hindgut80 14 of 4 3.33Up
Larval fat body16 31 of 4 0.70None
Larval trachea857 404 of 435.74Up
Larval carcass998 1094 of 441.59Up
S2 cells (growing)7 22 of 4 0.32Down
Whole fly24 24 of 4

Looking for FBgn0027600. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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