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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0027605 through 18771 annotations produced 1 hits

CG6842 (Vps4):

Annotation Number : CG6842
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027605
Gbrowse : chrX:17801719-17804757 (+) // 100.0 //
Probeset : 1624050_at
Accessions : protein= NP_573258;, nucleotide= NM_133030;
Pathway : engulfment // inferred from mutant phenotype /// 0030036 // actin cytoskeleton organization // inferred from mutant phe
FlyMine data for FBgn0027605.
Homophila reports that CG6842 is a close match (5e-16) to human gene CAR;CMAR;PGN;SPG7 (NP_955399), a gene associated with Spastic paraplegia-7, 607259 (3).
BioGrid reports that CG6842 interacts with CG7967 .
TRiP has 2 RNAi stocks for FBgn0027605 available for purchase.
VDRC has 3 RNAi stocks for FBgn0027605 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain378 94 of 4 2.20Up
Head246 44 of 4 1.40Up
Eye274 74 of 4 1.58Up
Thoracicoabdominal ganglion523 134 of 4 3.00Up
Salivary gland378 124 of 4 2.18Up
Crop338 64 of 4 1.90Up
Midgut239 74 of 4 1.40Up
Tubule408 54 of 4 2.30Up
Hindgut324 94 of 4 1.90Up
Heart265 74 of 4 1.53Up
Fat body227 194 of 4 1.31Up
Ovary231 64 of 4 1.30Up
Testis84 14 of 4 0.50Down
Male accessory glands204 34 of 4 1.20Up
Virgin spermatheca422 74 of 4 2.43Up
Mated spermatheca408 84 of 4 2.35Up
Adult carcass219 64 of 4 1.30Up
Larval CNS301 174 of 4 1.74Up
Larval Salivary gland259 64 of 4 1.49Up
Larval midgut305 34 of 4 1.76Up
Larval tubule457 124 of 4 2.60Up
Larval hindgut361 164 of 4 2.08Up
Larval fat body223 214 of 4 1.30None
Larval trachea435 274 of 4 2.50Up
Larval carcass317 194 of 4 1.83Up
S2 cells (growing)303 74 of 4 1.75Up
Whole fly174 34 of 4

Looking for FBgn0027605. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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