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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027609 through 18771 annotations produced 1 hits



"modifier of rpr and grim ( ubiquitously expressed"):

Annotation Number : CG15437
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : chr2L:4442869-4444677 (-) // 100.0 //
Probeset : 1629221_at
Accessions : protein= , nucleotide= NP_608833;
Pathway : 0006915 // apoptosis // inferred from mutant phenotype /// 0006915 // apoptosis // non-traceable author statement /// 00
Interpro : 0019005 // SCF ubiquitin ligase complex // non-traceable author statement
FlyMine data for full length.
Homophila reports that CG15437 is a close match (5e-20) to human gene RAD6A;UBE2A (NP_003327), a gene associated with Mental retardation, X-linked syndromic (3).
BioGrid reports that CG15437 interacts with CG5920 CG16983 CG1913 CG3379 CG3651 CG4581 CG5486 CG4125 CG12284 CG5123 CG4319 CG4319 CG4345 CG4345 CG4345 CG4345 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain218 54 of 4 2.60Up
Head84 24 of 4 1.00None
Eye105 54 of 4 1.26Up
Thoracicoabdominal ganglion211 64 of 4 2.50Up
Salivary gland125 74 of 4 1.50Up
Crop80 04 of 4 1.00None
Midgut52 24 of 4 0.60Down
Tubule101 34 of 4 1.20Up
Hindgut61 24 of 4 0.70Down
Heart48 14 of 4 0.57Down
Fat body49 24 of 4 0.59Down
Ovary151 54 of 4 1.80Up
Testis99 24 of 4 1.20None
Male accessory glands90 44 of 4 1.10None
Virgin spermatheca76 24 of 4 0.91None
Mated spermatheca68 24 of 4 0.82None
Adult carcass60 34 of 4 0.70Down
Larval CNS154 74 of 4 1.84Up
Larval Salivary gland199 74 of 4 2.38Up
Larval midgut60 14 of 4 0.71Down
Larval tubule88 44 of 4 1.00None
Larval hindgut73 24 of 4 0.88None
Larval fat body83 24 of 4 1.00None
Larval trachea85 24 of 4 1.02None
Larval carcass78 24 of 4 0.93None
S2 cells (growing)121 04 of 4 1.44Up
Whole fly83 64 of 4

Looking for FBgn0027609. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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