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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027610 through 18771 annotations produced 1 hits



(CG8790):

Annotation Number : CG8790
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027610
Gbrowse : chr3R:9190661-9194816 (+) // 100.0 //
Probeset : 1635808_s_at
Accessions : protein= NP_650279; /// NP_731793;, nucleotide= NM_142022; /// NM_169510;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005740 // mitochondrial envelope // inf
Interpro : 0005310 // dicarboxylic acid transmembrane transporter activity // inferred from sequence or structural similarity /// 0
FlyMine data for FBgn0027610.
Homophila reports that CG8790 is a close match (1e-28) to human gene UCP3 (NP_073714), a gene associated with {Obesity, severe, and type II diabetes}, 601665 (3).
VDRC has 3 RNAi stocks for FBgn0027610 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain605 124 of 4 1.30Up
Head719 104 of 4 1.60Up
Eye973 484 of 4 2.12Up
Thoracicoabdominal ganglion718 114 of 4 1.60Up
Salivary gland1146 714 of 4 2.50Up
Crop700 454 of 4 1.50Up
Midgut519 204 of 4 1.10Up
Tubule1531 1354 of 4 3.30Up
Hindgut2590 604 of 4 5.70Up
Heart1039 144 of 4 2.27Up
Fat body1782 1244 of 4 3.89Up
Ovary260 74 of 4 0.60Down
Testis153 64 of 4 0.30Down
Male accessory glands87 34 of 4 0.20Down
Virgin spermatheca1777 264 of 4 3.88Up
Mated spermatheca1345 604 of 4 2.94Up
Adult carcass1057 414 of 4 2.30Up
Larval CNS411 704 of 4 0.90None
Larval Salivary gland165 64 of 4 0.36Down
Larval midgut893 334 of 4 1.95Up
Larval tubule284 144 of 4 0.60Down
Larval hindgut2073 804 of 4 4.53Up
Larval fat body203 264 of 4 0.40Down
Larval trachea426 294 of 4 0.93None
Larval carcass409 304 of 4 0.89None
S2 cells (growing)481 24 of 4 1.05None
Whole fly458 104 of 4

Looking for FBgn0027610. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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