FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0027619 through 18771 annotations produced 1 hits

Complementation group E (Adam):

Annotation Number : CG12131
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027619
Gbrowse : chr2R:5856464-5858410 (+) // 100.0 //
Probeset : 1633287_at
Accessions : protein= NP_610541;, nucleotide= NM_136697;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005852 // eukaryotic translation initiation factor 3 co
Interpro : 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0003743 // tran
FlyMine data for FBgn0027619.
BDGP gene expression has embryonic in situ data for Adam: 28 pix of staining in 31 body parts.
BioGrid reports that CG12131 interacts with CG17894 CG6637 CG7285 .
VDRC has 3 RNAi stocks for FBgn0027619 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	426 ± 21	4 of 4	0.70	Down
Head	673 ± 38	4 of 4	1.10	None
Eye	685 ± 20	4 of 4	1.15	None
Thoracicoabdominal ganglion	456 ± 5	4 of 4	0.80	Down
Salivary gland	876 ± 23	4 of 4	1.47	Up
Crop	639 ± 19	4 of 4	1.10	None
Midgut	620 ± 10	4 of 4	1.00	None
Tubule	904 ± 54	4 of 4	1.50	Up
Hindgut	529 ± 16	4 of 4	0.90	None
Heart	763 ± 11	4 of 4	1.28	Up
Fat body	1068 ± 33	4 of 4	1.80	Up
Ovary	730 ± 10	4 of 4	1.20	Up
Testis	593 ± 13	4 of 4	1.00	None
Male accessory glands	1451 ± 29	4 of 4	2.40	Up
Virgin spermatheca	1335 ± 23	4 of 4	2.24	Up
Mated spermatheca	1461 ± 31	4 of 4	2.46	Up
Adult carcass	639 ± 55	4 of 4	1.10	None
Larval CNS	615 ± 29	4 of 4	1.03	None
Larval Salivary gland	1254 ± 29	4 of 4	2.11	Up
Larval midgut	609 ± 18	4 of 4	1.02	None
Larval tubule	698 ± 18	4 of 4	1.20	None
Larval hindgut	660 ± 25	4 of 4	1.11	None
Larval fat body	737 ± 31	4 of 4	1.20	Up
Larval trachea	874 ± 82	4 of 4	1.47	Up
Larval carcass	892 ± 87	4 of 4	1.50	Up
S2 cells (growing)	543 ± 12	4 of 4	0.91	None
Whole fly	595 ± 34	4 of 4

Looking for FBgn0027619. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720