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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027620 through 18771 annotations produced 1 hits



Chromatin Accessibility Complex (Acf1):

Annotation Number : CG1966
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027620
Gbrowse : chr3R:27619810-27625533 (+) // 100.0 //
Probeset : 1637574_at
Accessions : protein= NP_536734;, nucleotide= NM_080486;
Pathway : DNA-dependent // inferred from direct assay /// 0007399 // nervous system development // inferred from mutant phenotype
Interpro : 0005678 // chromatin assembly complex // non-traceable author statement /// 0008623 // chromatin accessibility complex /
FlyMine data for FBgn0027620.
BDGP gene expression has embryonic in situ data for Acf1: 36 pix of staining in 22 body parts.
BioGrid reports that CG1966 interacts with CG2224 CG8625 CG8625 CG8625 Dmel CG13399 CG15736 .
TRiP has 2 RNAi stocks for FBgn0027620 available for purchase.
VDRC has 2 RNAi stocks for FBgn0027620 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain218 ± 34 of 4 0.90None
Head89 ± 34 of 4 0.40Down
Eye113 ± 64 of 4 0.46Down
Thoracicoabdominal ganglion176 ± 64 of 4 0.70Down
Salivary gland89 ± 84 of 4 0.37Down
Crop73 ± 44 of 4 0.30Down
Midgut63 ± 34 of 4 0.30Down
Tubule79 ± 44 of 4 0.30Down
Hindgut70 ± 24 of 4 0.30Down
Heart56 ± 14 of 4 0.23Down
Fat body59 ± 74 of 4 0.24Down
Ovary696 ± 204 of 4 2.80Up
Testis122 ± 94 of 4 0.50Down
Male accessory glands52 ± 44 of 4 0.20Down
Virgin spermatheca57 ± 34 of 4 0.23Down
Mated spermatheca56 ± 24 of 4 0.23Down
Adult carcass63 ± 74 of 4 0.30Down
Larval CNS569 ± 214 of 4 2.33Up
Larval Salivary gland179 ± 54 of 4 0.73Down
Larval midgut70 ± 24 of 4 0.29Down
Larval tubule66 ± 34 of 4 0.30Down
Larval hindgut107 ± 14 of 4 0.44Down
Larval fat body61 ± 94 of 4 0.30Down
Larval trachea178 ± 164 of 4 0.73Down
Larval carcass98 ± 44 of 4 0.40Down
S2 cells (growing)256 ± 44 of 4 1.05None
Whole fly244 ± 164 of 4

Looking for FBgn0027620. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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