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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027621 through 18771 annotations produced 1 hits



6-phosphofructo-2-kinase (Pfrx):

Annotation Number : CG3400
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027621
Gbrowse : chrX:19392405-19402937 (+) // 100.0 //
Probeset : 1633454_s_at
Accessions : protein= NP_477451; /// NP_477452; /// NP_728249; /// NP_728250; /// NP_728251; /// NP_728252; /// NP_728253; /// NP_728254;, nucleotide= NM_058103; /// NM_058104; /// NM_167651; /// NM_167652; /// NM_167653; /// NM_167654; /// NM_167655; /// NM_167656;
Pathway : 6-bisphosphate metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred fro
FlyMine data for FBgn0027621.
BDGP gene expression has embryonic in situ data for Pfrx: 51 pix of staining in 35 body parts.
BioGrid reports that CG3400 interacts with CG3517 .
TRiP has 1 RNAi stocks for FBgn0027621 available for purchase.
VDRC has 2 RNAi stocks for FBgn0027621 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain196 74 of 4 1.10None
Head387 134 of 4 2.20Up
Eye89 114 of 4 0.51Down
Thoracicoabdominal ganglion178 114 of 4 1.00None
Salivary gland84 73 of 4 0.48Down
Crop213 124 of 4 1.20None
Midgut134 44 of 4 0.80None
Tubule73 14 of 4 0.40Down
Hindgut309 104 of 4 1.80Up
Heart259 34 of 4 1.49Up
Fat body767 1184 of 4 4.40Up
Ovary73 44 of 4 0.40Down
Testis46 14 of 4 0.30Down
Male accessory glands114 24 of 4 0.70Down
Virgin spermatheca351 114 of 4 2.02Up
Mated spermatheca280 344 of 4 1.61Up
Adult carcass644 404 of 4 3.70Up
Larval CNS40 74 of 4 0.23Down
Larval Salivary gland74 44 of 4 0.42Down
Larval midgut141 44 of 4 0.81None
Larval tubule202 84 of 4 1.20None
Larval hindgut98 64 of 4 0.57Down
Larval fat body204 174 of 4 1.20None
Larval trachea28 51 of 4 0.16Down
Larval carcass138 134 of 4 0.80None
S2 cells (growing)60 04 of 4 0.34Down
Whole fly174 134 of 4

Looking for FBgn0027621. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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