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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027657 through 18771 annotations produced 1 hits



Hemoglobin (glob1):

Annotation Number : CG9734
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027657
Gbrowse : chr3R:11722647-11730285 (-) // 100.0 //
Probeset : 1626641_s_at
Accessions : protein= NP_001163625; /// NP_524369; /// NP_732081; /// NP_732082; /// NP_732083;, nucleotide= NM_001170154; /// NM_079645; /// NM_169678; /// NM_169679; /// NM_169680;
Interpro : 0005344 // oxygen transporter activity // inferred from sequence or structural similarity /// 0005344 // oxygen transpor
FlyMine data for FBgn0027657.
TRiP has 2 RNAi stocks for FBgn0027657 available for purchase.
VDRC has 2 RNAi stocks for FBgn0027657 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain507 154 of 4 0.80None
Head1679 294 of 4 2.70Up
Eye706 1344 of 4 1.16None
Thoracicoabdominal ganglion452 114 of 4 0.70Down
Salivary gland300 294 of 4 0.49Down
Crop3677 1444 of 4 6.00Up
Midgut715 184 of 4 1.20None
Tubule471 534 of 4 0.80Down
Hindgut1412 264 of 4 2.30Up
Heart1790 1434 of 4 2.93Up
Fat body3143 2814 of 4 5.15Up
Ovary322 114 of 4 0.50Down
Testis119 34 of 4 0.20Down
Male accessory glands142 74 of 4 0.20Down
Virgin spermatheca4418 914 of 4 7.23Up
Mated spermatheca3106 1504 of 4 5.08Up
Adult carcass1809 634 of 4 3.00Up
Larval CNS162 244 of 4 0.27Down
Larval Salivary gland84 64 of 4 0.14Down
Larval midgut311 124 of 4 0.51Down
Larval tubule45 24 of 4 0.10Down
Larval hindgut289 284 of 4 0.47Down
Larval fat body169 424 of 4 0.30Down
Larval trachea1387 1804 of 4 2.27Up
Larval carcass116 134 of 4 0.19Down
S2 cells (growing)42 34 of 4 0.07Down
Whole fly611 394 of 4

Looking for FBgn0027657. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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