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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027779 through 18771 annotations produced 1 hits



Vacuolar H[+]-ATPase SFD subunit (VhaSFD):

Annotation Number : CG17332
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027779
Gbrowse : chr2L:16723137-16727825 (-) // 100.0 //
Probeset : 1633931_a_at
Accessions : protein= NP_523585; /// NP_723992; /// NP_723993;, nucleotide= NM_078861; /// NM_165177; /// NM_165178;
Pathway : "0000221 // vacuolar proton-transporting V-type ATPase
Interpro : V1 domain // inferred from sequence or structural similarity /// 0000221 // vacuolar proton-transporting V-type ATPase
FlyMine data for FBgn0027779.
BDGP gene expression has embryonic in situ data for VhaSFD: 15 pix of staining in 7 body parts.
BioGrid reports that CG17332 interacts with CG3050 CG3269 CG7849 .
TRiP has 1 RNAi stocks for FBgn0027779 available for purchase.
VDRC has 2 RNAi stocks for FBgn0027779 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1047 164 of 4 1.10Up
Head1021 154 of 4 1.10None
Eye1411 404 of 4 1.54Up
Thoracicoabdominal ganglion1392 424 of 4 1.50Up
Salivary gland5151 794 of 4 5.61Up
Crop973 104 of 4 1.10None
Midgut2332 614 of 4 2.50Up
Tubule3711 834 of 4 4.00Up
Hindgut3324 544 of 4 3.60Up
Heart1381 464 of 4 1.51Up
Fat body884 314 of 4 0.96None
Ovary717 124 of 4 0.80Down
Testis589 334 of 4 0.60Down
Male accessory glands764 124 of 4 0.80Down
Virgin spermatheca1889 334 of 4 2.06Up
Mated spermatheca1857 374 of 4 2.02Up
Adult carcass1026 234 of 4 1.10None
Larval CNS717 244 of 4 0.78Down
Larval Salivary gland2232 424 of 4 2.43Up
Larval midgut3306 664 of 4 3.60Up
Larval tubule3002 1254 of 4 3.30Up
Larval hindgut3995 404 of 4 4.35Up
Larval fat body1068 404 of 4 1.20Up
Larval trachea1623 1254 of 4 1.77Up
Larval carcass1451 344 of 4 1.58Up
S2 cells (growing)824 204 of 4 0.90None
Whole fly917 434 of 4

Looking for FBgn0027779. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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