FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0027783 through 18771 annotations produced 1 hits

SMC2 (SMC2):

Annotation Number : CG10212
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027783
Gbrowse : chr2R:10736093-10740155 (-) // 100.0 //
Probeset : 1634149_at
Accessions : protein= NP_610995;, nucleotide= NM_137151;
Pathway : 0000796 // condensin complex // inferred from sequence or structural similarity /// 0000796 // condensin complex // non-
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred fro
FlyMine data for FBgn0027783.
BDGP gene expression has embryonic in situ data for SMC2: 14 pix of staining in 14 body parts.
Homophila reports that CG10212 is a close match (5e-38) to human gene CDLS2;DXS423E;SMC1 (NP_006297), a gene associated with Cornelia de Lange syndrome 2, 300590 (3).
BioGrid reports that CG10212 interacts with CG17785 CG3911 .
TRiP has 2 RNAi stocks for FBgn0027783 available for purchase.
VDRC has 3 RNAi stocks for FBgn0027783 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	21 ± 0	4 of 4	0.30	Down
Head	12 ± 4	1 of 4	0.20	Down
Eye	16 ± 0	4 of 4	0.21	Down
Thoracicoabdominal ganglion	22 ± 1	4 of 4	0.30	Down
Salivary gland	19 ± 3	1 of 4	0.26	Down
Crop	8 ± 5	0 of 4	0.10	Down
Midgut	10 ± 1	0 of 4	0.10	Down
Tubule	22 ± 1	2 of 4	0.30	Down
Hindgut	11 ± 1	0 of 4	0.10	Down
Heart	10 ± 1	1 of 4	0.13	Down
Fat body	8 ± 3	0 of 4	0.11	Down
Ovary	233 ± 5	4 of 4	3.00	Up
Testis	47 ± 2	4 of 4	0.60	Down
Male accessory glands	16 ± 1	0 of 4	0.20	Down
Virgin spermatheca	10 ± 2	0 of 4	0.13	Down
Mated spermatheca	13 ± 2	0 of 4	0.17	Down
Adult carcass	11 ± 3	0 of 4	0.20	Down
Larval CNS	319 ± 19	4 of 4	4.14	Up
Larval Salivary gland	39 ± 5	4 of 4	0.50	Down
Larval midgut	15 ± 1	2 of 4	0.20	Down
Larval tubule	21 ± 2	4 of 4	0.30	Down
Larval hindgut	21 ± 3	4 of 4	0.28	Down
Larval fat body	23 ± 3	2 of 4	0.30	Down
Larval trachea	69 ± 3	4 of 4	0.90	None
Larval carcass	34 ± 3	4 of 4	0.45	Down
S2 cells (growing)	251 ± 8	4 of 4	3.25	Up
Whole fly	77 ± 9	4 of 4

Looking for FBgn0027783. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720