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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027784 through 18771 annotations produced 1 hits



Prp18 (Prp18):

Annotation Number : CG6011
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027784
Gbrowse : chr3R:14855689-14856973 (-) // 100.0 //
Probeset : 1624848_at
Accessions : protein= NP_650776;, nucleotide= NM_142519;
Pathway : via spliceosome // inferred from sequence or structural similarity /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // non-traceable author statement /// 0008380 // RNA splicing // inferred from electronic annotation"
FlyMine data for FBgn0027784.
BDGP gene expression has embryonic in situ data for Prp18: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0027784 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain67 ± 34 of 4 1.10None
Head47 ± 24 of 4 0.80Down
Eye51 ± 14 of 4 0.82None
Thoracicoabdominal ganglion62 ± 34 of 4 1.00None
Salivary gland45 ± 43 of 4 0.72Down
Crop48 ± 14 of 4 0.80Down
Midgut49 ± 34 of 4 0.80Down
Tubule34 ± 14 of 4 0.60Down
Hindgut45 ± 24 of 4 0.70Down
Heart49 ± 64 of 4 0.79None
Fat body50 ± 64 of 4 0.80None
Ovary150 ± 14 of 4 2.40Up
Testis47 ± 34 of 4 0.80Down
Male accessory glands58 ± 24 of 4 0.90None
Virgin spermatheca72 ± 14 of 4 1.14None
Mated spermatheca78 ± 34 of 4 1.24Up
Adult carcass41 ± 34 of 4 0.70Down
Larval CNS100 ± 24 of 4 1.59Up
Larval Salivary gland71 ± 24 of 4 1.12None
Larval midgut43 ± 34 of 4 0.69Down
Larval tubule44 ± 04 of 4 0.70Down
Larval hindgut38 ± 34 of 4 0.60Down
Larval fat body64 ± 44 of 4 1.00None
Larval trachea59 ± 114 of 4 0.94None
Larval carcass56 ± 14 of 4 0.89None
S2 cells (growing)54 ± 14 of 4 0.86None
Whole fly63 ± 44 of 4

Looking for FBgn0027784. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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