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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027785 through 18771 annotations produced 1 hits



NP15.6 (NP15.6):

Annotation Number : CG6008
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027785
Gbrowse : chr3R:14853073-14853737 (+) // 100.0 //
Probeset : 1623858_at
Accessions : protein= NP_650774;, nucleotide= NM_142517;
FlyMine data for FBgn0027785.
TRiP has 1 RNAi stocks for FBgn0027785 available for purchase.
VDRC has 2 RNAi stocks for FBgn0027785 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain891 ± 94 of 4 0.70None
Head1579 ± 494 of 4 1.30Up
Eye2372 ± 834 of 4 1.99Up
Thoracicoabdominal ganglion1212 ± 304 of 4 1.00None
Salivary gland2231 ± 734 of 4 1.87Up
Crop1602 ± 594 of 4 1.30Up
Midgut1123 ± 174 of 4 0.90None
Tubule1334 ± 534 of 4 1.10Up
Hindgut2074 ± 734 of 4 1.70Up
Heart1975 ± 504 of 4 1.66Up
Fat body1876 ± 1054 of 4 1.57Up
Ovary711 ± 124 of 4 0.60Down
Testis542 ± 34 of 4 0.50Down
Male accessory glands819 ± 264 of 4 0.70Down
Virgin spermatheca923 ± 454 of 4 0.77None
Mated spermatheca791 ± 554 of 4 0.66Down
Adult carcass2600 ± 1644 of 4 2.20Up
Larval CNS871 ± 164 of 4 0.73Down
Larval Salivary gland1237 ± 344 of 4 1.04None
Larval midgut1089 ± 414 of 4 0.91None
Larval tubule1249 ± 934 of 4 1.00None
Larval hindgut1855 ± 754 of 4 1.56Up
Larval fat body773 ± 634 of 4 0.60Down
Larval trachea1110 ± 894 of 4 0.93None
Larval carcass1831 ± 1364 of 4 1.54Up
S2 cells (growing)603 ± 144 of 4 0.51Down
Whole fly1191 ± 954 of 4

Looking for FBgn0027785. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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