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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027788 through 18771 annotations produced 1 hits



Hairy/E(spl)-related with YRPW motif (Hey):

Annotation Number : CG11194
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027788
Gbrowse : chr2R:3882940-3886078 (-) // 100.0 //
Probeset : 1624527_at
Accessions : protein= NP_523657;, nucleotide= NM_078933;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007219 // Notch signaling pathway // inferred from electronic
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0027788.
BioGrid reports that CG11194 interacts with CG8704 CG8927 CG11489 CG13088 CG13358 CG13425 CG13510 CG13512 CG13694 CG16874 CG17018 CG17221 CG17894 CG18412 CG18734 CG3066 CG3203 CG32392 CG3832 CG3929 CG4183 CG4274 CG4603 CG4818 CG5468 CG5550 CG7187 CG8256 CG8420 CG8907 CG9184 CG9436 CG18816 CG30160 CG6447 CG6478 CG33555 .
TRiP has 2 RNAi stocks for FBgn0027788 available for purchase.
VDRC has 3 RNAi stocks for FBgn0027788 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 13 of 4 2.10Up
Head7 20 of 4 1.20None
Eye3 10 of 4 0.56None
Thoracicoabdominal ganglion9 00 of 4 1.50None
Salivary gland8 30 of 4 1.29None
Crop12 31 of 4 2.00None
Midgut5 10 of 4 0.80None
Tubule5 00 of 4 0.80Down
Hindgut1 00 of 4 0.30None
Heart1 00 of 4 0.16None
Fat body4 30 of 4 0.66None
Ovary3 10 of 4 0.60None
Testis15 04 of 4 2.30Up
Male accessory glands9 30 of 4 1.40None
Virgin spermatheca2 00 of 4 0.44None
Mated spermatheca6 20 of 4 0.93None
Adult carcass5 20 of 4 0.80None
Larval CNS118 114 of 418.27Up
Larval Salivary gland3 10 of 4 0.55None
Larval midgut8 20 of 4 1.31None
Larval tubule6 30 of 4 1.00None
Larval hindgut7 21 of 4 1.12None
Larval fat body13 11 of 4 2.00Up
Larval trachea6 51 of 4 0.97None
Larval carcass3 10 of 4 0.49None
S2 cells (growing)2 10 of 4 0.42None
Whole fly6 10 of 4

Looking for FBgn0027788. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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