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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027793 through 18771 annotations produced 1 hits



(CG14787):

Annotation Number : CG14787
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027793
Gbrowse : chrX:1354839-1355700 (-) // 100.0 //
Probeset : 1637145_at
Accessions : protein= NP_569914;, nucleotide= NM_130558;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation
FlyMine data for FBgn0027793.
BDGP gene expression has embryonic in situ data for EG:BACN32G11.4: 13 pix of staining in 2 body parts.
VDRC has 3 RNAi stocks for FBgn0027793 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 1.00None
Head4 ± 10 of 4 0.90None
Eye7 ± 00 of 4 1.41None
Thoracicoabdominal ganglion8 ± 10 of 4 1.60None
Salivary gland17 ± 50 of 4 3.20None
Crop8 ± 20 of 4 1.60None
Midgut17 ± 10 of 4 3.30Up
Tubule177 ± 843 of 433.00Up
Hindgut7 ± 20 of 4 1.50None
Heart20 ± 30 of 4 3.89Up
Fat body15 ± 50 of 4 2.91Up
Ovary6 ± 10 of 4 1.10None
Testis5 ± 00 of 4 1.10None
Male accessory glands6 ± 30 of 4 1.10None
Virgin spermatheca20 ± 22 of 4 3.76Up
Mated spermatheca13 ± 31 of 4 2.48None
Adult carcass22 ± 20 of 4 4.10Up
Larval CNS124 ± 234 of 423.09Up
Larval Salivary gland14 ± 10 of 4 2.60Up
Larval midgut17 ± 20 of 4 3.33Up
Larval tubule256 ± 414 of 447.80Up
Larval hindgut13 ± 00 of 4 2.43Up
Larval fat body76 ± 44 of 414.20Up
Larval trachea5 ± 30 of 4 1.07None
Larval carcass14 ± 20 of 4 2.61Up
S2 cells (growing)30 ± 11 of 4 5.68Up
Whole fly5 ± 10 of 4

Looking for FBgn0027793. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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