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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027794 through 18771 annotations produced 1 hits



(CG14786):

Annotation Number : CG14786
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027794
Gbrowse : chrX:1351207-1354591 (-) // 100.0 //
Probeset : 1639032_at
Accessions : protein= NP_569913;, nucleotide= NM_130557;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from
FlyMine data for FBgn0027794.
BDGP gene expression has embryonic in situ data for EG:BACN32G11.3: 8 pix of staining in 9 body parts.
Homophila reports that CG14786 is a close match (9e-25) to human gene LRP130;LRPPRC;LSFC (NP_573566), a gene associated with Leigh syndrome, French-Canadian type, 220111 (3).
BioGrid reports that CG14786 interacts with CG32016 .
VDRC has 1 RNAi stocks for FBgn0027794 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain49 14 of 4 1.40Up
Head50 34 of 4 1.50Up
Eye36 14 of 4 1.06None
Thoracicoabdominal ganglion62 34 of 4 1.80Up
Salivary gland50 14 of 4 1.46Up
Crop38 44 of 4 1.10None
Midgut27 21 of 4 0.80None
Tubule53 14 of 4 1.60Up
Hindgut49 14 of 4 1.50Up
Heart57 24 of 4 1.66Up
Fat body54 74 of 4 1.58Up
Ovary41 44 of 4 1.20None
Testis12 14 of 4 0.40Down
Male accessory glands50 24 of 4 1.50Up
Virgin spermatheca74 34 of 4 2.19Up
Mated spermatheca65 24 of 4 1.92Up
Adult carcass53 64 of 4 1.60None
Larval CNS56 44 of 4 1.64Up
Larval Salivary gland47 34 of 4 1.39Up
Larval midgut31 34 of 4 0.91None
Larval tubule22 24 of 4 0.60Down
Larval hindgut45 44 of 4 1.32None
Larval fat body15 21 of 4 0.50Down
Larval trachea52 34 of 4 1.55Up
Larval carcass44 14 of 4 1.30Up
S2 cells (growing)48 14 of 4 1.42Up
Whole fly34 24 of 4

Looking for FBgn0027794. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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