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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027795 through 18771 annotations produced 1 hits



(CG14785):

Annotation Number : CG14785
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027795
Gbrowse : chrX:1349247-1351087 (-) // 100.0 //
Probeset : 1623316_at
Accessions : protein= NP_569912;, nucleotide= NM_130556;
FlyMine data for FBgn0027795.
VDRC has 2 RNAi stocks for FBgn0027795 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 10 of 4 0.40Down
Head10 30 of 4 0.30Down
Eye6 00 of 4 0.17Down
Thoracicoabdominal ganglion26 20 of 4 0.70Down
Salivary gland20 20 of 4 0.55Down
Crop8 20 of 4 0.20Down
Midgut1 00 of 4 0.00Down
Tubule10 20 of 4 0.30Down
Hindgut3 10 of 4 0.10Down
Heart6 10 of 4 0.18Down
Fat body3 20 of 4 0.10Down
Ovary4 10 of 4 0.10Down
Testis371 74 of 410.20Up
Male accessory glands12 20 of 4 0.40Down
Virgin spermatheca13 20 of 4 0.38Down
Mated spermatheca15 12 of 4 0.41Down
Adult carcass6 40 of 4 0.20Down
Larval CNS17 04 of 4 0.48Down
Larval Salivary gland4 10 of 4 0.12Down
Larval midgut3 10 of 4 0.08Down
Larval tubule3 10 of 4 0.10Down
Larval hindgut4 20 of 4 0.11Down
Larval fat body39 151 of 4 1.10None
Larval trachea12 24 of 4 0.35Down
Larval carcass2 00 of 4 0.06Down
S2 cells (growing)9 10 of 4 0.27Down
Whole fly36 24 of 4

Looking for FBgn0027795. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime