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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027836 through 18771 annotations produced 1 hits



Dgp-1 (Dgp-1):

Annotation Number : CG5729
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027836
Gbrowse : chr2R:14055917-14060112 (-) // 99.83 //
Probeset : 1640341_s_at
Accessions : protein= NP_611302; /// NP_725760;, nucleotide= NM_137458; /// NM_166274;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from ele
FlyMine data for FBgn0027836.
Homophila reports that CG5729 is a close match (8e-11) to human gene COXPD4;EFTU;TUFM (NP_003312), a gene associated with Combined oxidative phosphorylation deficiency 4, 610678 (3).
VDRC has 3 RNAi stocks for FBgn0027836 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain335 ± 114 of 4 1.50Up
Head249 ± 64 of 4 1.10None
Eye239 ± 174 of 4 1.04None
Thoracicoabdominal ganglion317 ± 134 of 4 1.40Up
Salivary gland567 ± 54 of 4 2.47Up
Crop251 ± 64 of 4 1.10None
Midgut177 ± 44 of 4 0.80Down
Tubule240 ± 44 of 4 1.00Up
Hindgut170 ± 44 of 4 0.70Down
Heart134 ± 114 of 4 0.59Down
Fat body177 ± 134 of 4 0.77Down
Ovary299 ± 54 of 4 1.30Up
Testis123 ± 84 of 4 0.50Down
Male accessory glands652 ± 204 of 4 2.80Up
Virgin spermatheca717 ± 1534 of 4 3.13Up
Mated spermatheca650 ± 244 of 4 2.83Up
Adult carcass193 ± 124 of 4 0.80None
Larval CNS339 ± 264 of 4 1.48Up
Larval Salivary gland692 ± 334 of 4 3.01Up
Larval midgut141 ± 224 of 4 0.61Down
Larval tubule214 ± 84 of 4 0.90None
Larval hindgut131 ± 84 of 4 0.57Down
Larval fat body218 ± 134 of 4 1.00None
Larval trachea124 ± 184 of 4 0.54Down
Larval carcass197 ± 174 of 4 0.86None
S2 cells (growing)893 ± 824 of 4 3.89Up
Whole fly229 ± 164 of 4

Looking for FBgn0027836. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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