Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027841 through 18771 annotations produced 1 hits



Cleavage stimulation factor 64 kilodalton subunit (CstF-64):

Annotation Number : CG7697
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027841
Gbrowse : chr3R:14485113-14486965 (+) // 100.0 //
Probeset : 1640568_at
Accessions : protein= NP_477453;, nucleotide= NM_058105;
Pathway : 0005848 // mRNA cleavage stimulating factor complex // inferred from sequence or structural similarity /// 0005848 // mR
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0027841.
BDGP gene expression has embryonic in situ data for CstF-64: 4 pix of staining in 1 body parts.
BioGrid reports that CG7697 interacts with CG7995 CG9184 CG9283 .
VDRC has 1 RNAi stocks for FBgn0027841 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain55 04 of 4 0.80Down
Head41 12 of 4 0.60Down
Eye47 44 of 4 0.66Down
Thoracicoabdominal ganglion58 31 of 4 0.80None
Salivary gland87 54 of 4 1.21None
Crop51 20 of 4 0.70Down
Midgut49 30 of 4 0.70Down
Tubule42 30 of 4 0.60Down
Hindgut44 10 of 4 0.60Down
Heart28 02 of 4 0.40Down
Fat body45 70 of 4 0.62Down
Ovary122 34 of 4 1.70Up
Testis46 14 of 4 0.60Down
Male accessory glands85 42 of 4 1.20None
Virgin spermatheca51 00 of 4 0.72Down
Mated spermatheca56 00 of 4 0.78Down
Adult carcass38 20 of 4 0.50Down
Larval CNS124 54 of 4 1.72Up
Larval Salivary gland88 03 of 4 1.22Up
Larval midgut53 30 of 4 0.74Down
Larval tubule59 50 of 4 0.80None
Larval hindgut59 20 of 4 0.82Down
Larval fat body55 41 of 4 0.80Down
Larval trachea64 54 of 4 0.89None
Larval carcass68 50 of 4 0.95None
S2 cells (growing)76 52 of 4 1.05None
Whole fly72 41 of 4

Looking for FBgn0027841. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime