FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0027864 through 18771 annotations produced 1 hits

Ogg1 (Ogg1):

Annotation Number : CG1795
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027864
Gbrowse : chrX:8584406-8585837 (+) // 100.0 //
Probeset : 1636807_at
Accessions : protein= NP_572499;, nucleotide= NM_132271;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0
Interpro : "0003677 // DNA binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // inferred from elect
FlyMine data for FBgn0027864.
Homophila reports that CG1795 is a close match (3e-19) to human gene OGG1 (NP_058436), a gene associated with Renal cell carcinoma, clear cell, somatic, 144700 (3).
VDRC has 3 RNAi stocks for FBgn0027864 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	68 ± 2	4 of 4	0.90	None
Head	60 ± 5	4 of 4	0.80	Down
Eye	75 ± 2	4 of 4	0.95	None
Thoracicoabdominal ganglion	87 ± 2	4 of 4	1.10	None
Salivary gland	136 ± 7	4 of 4	1.71	Up
Crop	91 ± 3	4 of 4	1.10	None
Midgut	45 ± 5	4 of 4	0.60	Down
Tubule	102 ± 13	4 of 4	1.30	None
Hindgut	70 ± 2	4 of 4	0.90	None
Heart	67 ± 5	4 of 4	0.85	None
Fat body	52 ± 6	4 of 4	0.65	Down
Ovary	183 ± 3	4 of 4	2.30	Up
Testis	15 ± 1	4 of 4	0.20	Down
Male accessory glands	77 ± 3	4 of 4	1.00	None
Virgin spermatheca	85 ± 4	4 of 4	1.07	None
Mated spermatheca	116 ± 7	4 of 4	1.46	Up
Adult carcass	40 ± 1	4 of 4	0.50	Down
Larval CNS	77 ± 4	4 of 4	0.97	None
Larval Salivary gland	74 ± 5	4 of 4	0.93	None
Larval midgut	40 ± 1	4 of 4	0.51	Down
Larval tubule	107 ± 6	4 of 4	1.40	Up
Larval hindgut	56 ± 0	4 of 4	0.71	Down
Larval fat body	45 ± 1	4 of 4	0.60	Down
Larval trachea	91 ± 6	4 of 4	1.15	None
Larval carcass	41 ± 4	4 of 4	0.52	Down
S2 cells (growing)	99 ± 1	4 of 4	1.25	Up
Whole fly	79 ± 4	4 of 4

Looking for FBgn0027864. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720