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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027865 through 18771 annotations produced 1 hits



Tetraspanin 96F (Tsp96F):

Annotation Number : CG6120
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027865
Gbrowse : chr3R:21699255-21707162 (-) // 100.0 //
Probeset : 1631105_at
Accessions : protein= NP_524500;, nucleotide= NM_079776;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0027865.
BDGP gene expression has embryonic in situ data for Tsp96F: 10 pix of staining in 19 body parts.
Homophila reports that CG6120 is a close match (1e-15) to human gene A15;MRX58;MXS1;TM4SF2 (NP_004606), a gene associated with Mental retardation, X-linked 58, 300210 (3).
TRiP has 1 RNAi stocks for FBgn0027865 available for purchase.
VDRC has 4 RNAi stocks for FBgn0027865 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain278 ± 124 of 4 2.50Up
Head171 ± 154 of 4 1.50Up
Eye32 ± 14 of 4 0.29Down
Thoracicoabdominal ganglion223 ± 204 of 4 2.00Up
Salivary gland534 ± 84 of 4 4.81Up
Crop329 ± 84 of 4 3.00Up
Midgut14 ± 24 of 4 0.10Down
Tubule80 ± 34 of 4 0.70Down
Hindgut83 ± 34 of 4 0.80Down
Heart101 ± 124 of 4 0.91None
Fat body55 ± 64 of 4 0.49Down
Ovary244 ± 64 of 4 2.20Up
Testis15 ± 14 of 4 0.10Down
Male accessory glands49 ± 34 of 4 0.40Down
Virgin spermatheca26 ± 24 of 4 0.23Down
Mated spermatheca31 ± 04 of 4 0.28Down
Adult carcass126 ± 14 of 4 1.10None
Larval CNS228 ± 154 of 4 2.05Up
Larval Salivary gland263 ± 144 of 4 2.36Up
Larval midgut12 ± 22 of 4 0.12Down
Larval tubule402 ± 174 of 4 3.60Up
Larval hindgut57 ± 34 of 4 0.52Down
Larval fat body713 ± 1134 of 4 6.40Up
Larval trachea95 ± 104 of 4 0.86None
Larval carcass162 ± 164 of 4 1.46Up
S2 cells (growing)51 ± 34 of 4 0.46Down
Whole fly111 ± 74 of 4

Looking for FBgn0027865. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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