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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027868 through 18771 annotations produced 1 hits



Nup170 (Nup107):

Annotation Number : CG6743
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027868
Gbrowse : chr2L:10733293-10736053 (-) // 100.0 //
Probeset : 1632364_at
Accessions : protein= NP_609446;, nucleotide= NM_135602;
Pathway : 0005635 // nuclear envelope // inferred from direct assay /// 0005643 // nuclear pore // inferred from sequence or struc
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0027868.
BDGP gene expression has embryonic in situ data for BcDNA:LD18761: 12 pix of staining in 11 body parts.
VDRC has 2 RNAi stocks for FBgn0027868 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain78 ± 44 of 4 0.50Down
Head66 ± 34 of 4 0.40Down
Eye55 ± 34 of 4 0.35Down
Thoracicoabdominal ganglion88 ± 24 of 4 0.60Down
Salivary gland95 ± 34 of 4 0.60Down
Crop78 ± 34 of 4 0.50Down
Midgut58 ± 34 of 4 0.40Down
Tubule89 ± 24 of 4 0.60Down
Hindgut66 ± 24 of 4 0.40Down
Heart55 ± 24 of 4 0.35Down
Fat body60 ± 44 of 4 0.38Down
Ovary267 ± 64 of 4 1.70Up
Testis51 ± 24 of 4 0.30Down
Male accessory glands159 ± 74 of 4 1.00None
Virgin spermatheca68 ± 44 of 4 0.43Down
Mated spermatheca69 ± 04 of 4 0.44Down
Adult carcass77 ± 54 of 4 0.50Down
Larval CNS278 ± 304 of 4 1.75Up
Larval Salivary gland182 ± 104 of 4 1.15None
Larval midgut74 ± 54 of 4 0.47Down
Larval tubule66 ± 34 of 4 0.40Down
Larval hindgut101 ± 74 of 4 0.64Down
Larval fat body53 ± 34 of 4 0.30Down
Larval trachea148 ± 104 of 4 0.93None
Larval carcass99 ± 94 of 4 0.63Down
S2 cells (growing)174 ± 34 of 4 1.10None
Whole fly159 ± 74 of 4

Looking for FBgn0027868. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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