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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027903 through 18771 annotations produced 1 hits



DNApol- delta small subunit (CG12018):

Annotation Number : CG12018
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027903
Gbrowse : chr3L:1775632-1777024 (+) // 100.0 //
Probeset : 1635335_at
Accessions : protein= NP_647659;, nucleotide= NM_139402;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005875 // microtubule associated complex // inferred from
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003887 // DNA-directed DNA polymerase activity // inf
FlyMine data for FBgn0027903.
BioGrid reports that CG12018 interacts with CG14534 CG1478 CG2830 .
VDRC has 2 RNAi stocks for FBgn0027903 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain63 ± 34 of 4 0.30Down
Head40 ± 34 of 4 0.20Down
Eye49 ± 04 of 4 0.25Down
Thoracicoabdominal ganglion63 ± 64 of 4 0.30Down
Salivary gland35 ± 60 of 4 0.18Down
Crop29 ± 14 of 4 0.20Down
Midgut37 ± 20 of 4 0.20Down
Tubule41 ± 53 of 4 0.20Down
Hindgut33 ± 13 of 4 0.20Down
Heart33 ± 14 of 4 0.17Down
Fat body24 ± 31 of 4 0.13Down
Ovary403 ± 54 of 4 2.10Up
Testis118 ± 44 of 4 0.60Down
Male accessory glands30 ± 20 of 4 0.20Down
Virgin spermatheca36 ± 24 of 4 0.19Down
Mated spermatheca38 ± 24 of 4 0.20Down
Adult carcass26 ± 01 of 4 0.10Down
Larval CNS240 ± 164 of 4 1.25Up
Larval Salivary gland75 ± 63 of 4 0.39Down
Larval midgut26 ± 13 of 4 0.14Down
Larval tubule40 ± 33 of 4 0.20Down
Larval hindgut45 ± 34 of 4 0.24Down
Larval fat body50 ± 82 of 4 0.30Down
Larval trachea103 ± 114 of 4 0.54Down
Larval carcass48 ± 44 of 4 0.25Down
S2 cells (growing)266 ± 134 of 4 1.38Up
Whole fly193 ± 124 of 4

Looking for FBgn0027903. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime