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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028325 through 18771 annotations produced 1 hits



Pyruvate dehydrogenase (l(1)G0334):

Annotation Number : CG7010
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028325
Gbrowse : chrX:4596304-4599156 (+) // 100.0 //
Probeset : 1635253_a_at
Accessions : protein= NP_572181; /// NP_726945; /// NP_726946; /// NP_726947;, nucleotide= NM_131953; /// NM_167017; /// NM_167018; /// NM_167019;
Pathway : 0043231 // intracellular membrane-bounded organelle // inferred from electronic annotation /// 0045254 // pyruvate dehyd
Interpro : "0004739 // pyruvate dehydrogenase (acetyl-transferring) activity // inferred from sequence or structural similarity ///
FlyMine data for FBgn0028325.
Homophila reports that CG7010 is a close match (3e-19) to human gene BCKDHA;MSUD1 (NP_000700), a gene associated with Maple syrup urine disease, type Ia, 248600 (3).
BioGrid reports that CG7010 interacts with CG7435 CG8472 .
VDRC has 2 RNAi stocks for FBgn0028325 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1306 534 of 4 1.40Up
Head1216 674 of 4 1.30Up
Eye1007 214 of 4 1.07None
Thoracicoabdominal ganglion1413 324 of 4 1.50Up
Salivary gland1289 774 of 4 1.37Up
Crop1255 304 of 4 1.30Up
Midgut778 114 of 4 0.80Down
Tubule3063 994 of 4 3.20Up
Hindgut1398 94 of 4 1.50Up
Heart1690 564 of 4 1.79Up
Fat body1822 1634 of 4 1.93Up
Ovary866 134 of 4 0.90None
Testis58 44 of 4 0.10Down
Male accessory glands346 64 of 4 0.40Down
Virgin spermatheca2489 604 of 4 2.64Up
Mated spermatheca1950 844 of 4 2.07Up
Adult carcass2208 554 of 4 2.30Up
Larval CNS438 284 of 4 0.46Down
Larval Salivary gland489 264 of 4 0.52Down
Larval midgut567 394 of 4 0.60Down
Larval tubule608 444 of 4 0.60Down
Larval hindgut1005 404 of 4 1.07None
Larval fat body278 234 of 4 0.30Down
Larval trachea525 414 of 4 0.56Down
Larval carcass1120 1264 of 4 1.19None
S2 cells (growing)547 104 of 4 0.58Down
Whole fly943 404 of 4

Looking for FBgn0028325. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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