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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028369 through 18771 annotations produced 2 hits



dumbfounded (kirre):

Annotation Number : CR_tc_LD23922
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028369
Gbrowse : chrX:2756792-2993900 (+) // 100.0 //
Probeset : 1633514_at
Accessions : protein= NP_525059; /// NP_726844;, nucleotide= NM_080320; /// NM_166958;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // non-traceable author statemen
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0028369.
VDRC has 5 RNAi stocks for FBgn0028369 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.60None
Head4 10 of 4 1.70None
Eye6 00 of 4 2.88Up
Thoracicoabdominal ganglion1 00 of 4 0.70None
Salivary gland6 20 of 4 2.58None
Crop2 00 of 4 1.00None
Midgut1 00 of 4 0.50None
Tubule1 00 of 4 0.60Down
Hindgut5 20 of 4 2.20None
Heart1 00 of 4 0.68None
Fat body3 20 of 4 1.35None
Ovary0 00 of 4 0.30None
Testis0 00 of 4 0.30None
Male accessory glands1 00 of 4 0.50None
Virgin spermatheca1 00 of 4 0.68None
Mated spermatheca3 10 of 4 1.41None
Adult carcass9 10 of 4 3.90Up
Larval CNS4 30 of 4 1.68None
Larval Salivary gland1 00 of 4 0.48None
Larval midgut1 00 of 4 0.40None
Larval tubule2 00 of 4 0.90None
Larval hindgut0 00 of 4 0.29None
Larval fat body2 00 of 4 1.20None
Larval trachea1 00 of 4 0.53None
Larval carcass2 00 of 4 0.96None
S2 cells (growing)2 10 of 4 1.04None
Whole fly2 10 of 4



dumbfounded (kirre):

Annotation Number : CG3653
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028369
Gbrowse : chrX:2994110-3026824 (+) // 99.66 //
Probeset : 1633888_s_at
Accessions : protein= NP_525059; /// NP_726844;, nucleotide= NM_080320; /// NM_166958;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // non-traceable author statemen
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0028369.
Homophila reports that CG3653 is a close match (1e-14) to human gene ARMD1;FBLN6;FIBL6;HMCN1 (NP_114141), a gene associated with {Macular degeneration, age-related, 1}, 603075 (3).
BioGrid reports that CG3653 interacts with CG32096 .
VDRC has 5 RNAi stocks for FBgn0028369 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain121 64 of 4 8.20Up
Head34 34 of 4 2.40Up
Eye137 154 of 4 9.32Up
Thoracicoabdominal ganglion93 34 of 4 6.40Up
Salivary gland22 51 of 4 1.52None
Crop19 24 of 4 1.30None
Midgut6 20 of 4 0.40Down
Tubule5 10 of 4 0.40Down
Hindgut11 11 of 4 0.80None
Heart316 174 of 421.45Up
Fat body26 73 of 4 1.76None
Ovary11 11 of 4 0.80None
Testis12 13 of 4 0.80None
Male accessory glands3 00 of 4 0.20Down
Virgin spermatheca16 33 of 4 1.14None
Mated spermatheca14 11 of 4 0.95None
Adult carcass14 20 of 4 1.00None
Larval CNS56 84 of 4 3.83Up
Larval Salivary gland10 20 of 4 0.72None
Larval midgut11 30 of 4 0.74None
Larval tubule5 20 of 4 0.40Down
Larval hindgut6 10 of 4 0.43Down
Larval fat body9 40 of 4 0.60None
Larval trachea136 124 of 4 9.22Up
Larval carcass13 30 of 4 0.92None
S2 cells (growing)18 10 of 4 1.26Up
Whole fly14 01 of 4

Looking for FBgn0028369. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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