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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028371 through 18771 annotations produced 2 hits



filamin (jbug):

Annotation Number : CG30092
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028371
Gbrowse : chr2R:18604825-18624346 (-) // 100.0 //
Probeset : 1633144_at
Accessions : protein= NP_001163256; /// NP_001163257; /// NP_001163258; /// NP_001163259; /// NP_001163260; /// NP_726234; /// NP_726235; /// NP_726238;, nucleotide= NM_001169785; /// NM_001169786; /// NM_001169787; /// NM_001169788; /// NM_001169789; /// NM_166546; /// NM_166547; /// NM_166550;
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0003779 // actin binding // inferred fro
FlyMine data for FBgn0028371.
BDGP gene expression has embryonic in situ data for jbug: 40 pix of staining in 21 body parts.
Homophila reports that CG30092 is a close match (4e-13) to human gene KIAA0796;KIAA1262;KIAA1756;SCAR8;SYNE1 (NP_149062), a gene associated with Spinocerebellar ataxia, autosomal recessive 8, 610743 (3).
BioGrid reports that CG30092 interacts with CG30393 CG4285 CG7726 CG8676 CG31022 CG3752 CG4311 CG5034 CG6459 CG7911 CG8057 CG8230 .
TRiP has 2 RNAi stocks for FBgn0028371 available for purchase.
VDRC has 3 RNAi stocks for FBgn0028371 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 ± 14 of 4 0.30Down
Head204 ± 94 of 4 2.70Up
Eye247 ± 184 of 4 3.29Up
Thoracicoabdominal ganglion20 ± 14 of 4 0.30Down
Salivary gland475 ± 144 of 4 6.32Up
Crop998 ± 194 of 413.30Up
Midgut17 ± 13 of 4 0.20Down
Tubule14 ± 02 of 4 0.20Down
Hindgut550 ± 174 of 4 7.30Up
Heart20 ± 24 of 4 0.27Down
Fat body38 ± 74 of 4 0.51Down
Ovary27 ± 24 of 4 0.40Down
Testis24 ± 24 of 4 0.30Down
Male accessory glands261 ± 84 of 4 3.50Up
Virgin spermatheca92 ± 24 of 4 1.23Up
Mated spermatheca142 ± 184 of 4 1.89Up
Adult carcass207 ± 134 of 4 2.80Up
Larval CNS47 ± 54 of 4 0.63Down
Larval Salivary gland336 ± 274 of 4 4.48Up
Larval midgut21 ± 14 of 4 0.28Down
Larval tubule2 ± 10 of 4 0.00Down
Larval hindgut623 ± 304 of 4 8.29Up
Larval fat body14 ± 21 of 4 0.20Down
Larval trachea510 ± 574 of 4 6.78Up
Larval carcass333 ± 364 of 4 4.43Up
S2 cells (growing)1 ± 10 of 4 0.02Down
Whole fly75 ± 44 of 4



filamin (jbug):

Annotation Number : CG30092
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028371
Gbrowse : chr2R:18610085-18624346 (-) // 100.0 //
Probeset : 1634170_a_at
Accessions : protein= NP_001163256; /// NP_001163257; /// NP_001163258; /// NP_001163259; /// NP_001163260; /// NP_726234; /// NP_726235; /// NP_726238;, nucleotide= NM_001169785; /// NM_001169786; /// NM_001169787; /// NM_001169788; /// NM_001169789; /// NM_166546; /// NM_166547; /// NM_166550;
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0003779 // actin binding // inferred fro
FlyMine data for FBgn0028371.
BDGP gene expression has embryonic in situ data for jbug: 40 pix of staining in 21 body parts.
Homophila reports that CG30092 is a close match (4e-13) to human gene KIAA0796;KIAA1262;KIAA1756;SCAR8;SYNE1 (NP_149062), a gene associated with Spinocerebellar ataxia, autosomal recessive 8, 610743 (3).
BioGrid reports that CG30092 interacts with CG30393 CG4285 CG7726 CG8676 CG31022 CG3752 CG4311 CG5034 CG6459 CG7911 CG8057 CG8230 .
TRiP has 2 RNAi stocks for FBgn0028371 available for purchase.
VDRC has 3 RNAi stocks for FBgn0028371 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 12 of 4 0.40Down
Head78 ± 94 of 4 3.40Up
Eye99 ± 84 of 4 4.35Up
Thoracicoabdominal ganglion9 ± 23 of 4 0.40Down
Salivary gland88 ± 94 of 4 3.85Up
Crop399 ± 74 of 417.50Up
Midgut13 ± 20 of 4 0.60Down
Tubule6 ± 10 of 4 0.30Down
Hindgut161 ± 44 of 4 7.10Up
Heart9 ± 12 of 4 0.43Down
Fat body9 ± 40 of 4 0.41Down
Ovary5 ± 00 of 4 0.20Down
Testis3 ± 10 of 4 0.20Down
Male accessory glands48 ± 54 of 4 2.10Up
Virgin spermatheca23 ± 04 of 4 1.03None
Mated spermatheca57 ± 84 of 4 2.50Up
Adult carcass91 ± 64 of 4 4.00Up
Larval CNS8 ± 23 of 4 0.36Down
Larval Salivary gland31 ± 30 of 4 1.37None
Larval midgut12 ± 00 of 4 0.55Down
Larval tubule7 ± 10 of 4 0.30Down
Larval hindgut225 ± 84 of 4 9.87Up
Larval fat body7 ± 20 of 4 0.30Down
Larval trachea241 ± 164 of 410.54Up
Larval carcass423 ± 554 of 418.51Up
S2 cells (growing)1 ± 00 of 4 0.07Down
Whole fly22 ± 14 of 4

Looking for FBgn0028371. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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