Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0028379 through 18771 annotations produced 1 hits


farinelli (fan):

Annotation Number : CG7919
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028379
Gbrowse : chr3L:8102268-8103148 (+) // 100.0 //
Probeset : 1627553_at
Accessions : protein= NP_524657;, nucleotide= NM_079918;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // non-trac
Interpro : 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferre
FlyMine data for FBgn0028379.
BDGP gene expression has embryonic in situ data for fan: 6 pix of staining in 1 body parts.
Homophila reports that CG7919 is a close match (2e-14) to human gene ALS8;VAPB;VAPC (NP_004729), a gene associated with Amyotrophic lateral sclerosis 8, 608627 (3);Spinal muscular atrophy, late-onset, Finkel type, 182980 (3).
BioGrid reports that CG7919 interacts with CG7937 .
TRiP has 1 RNAi stocks for FBgn0028379 available for purchase.
VDRC has 2 RNAi stocks for FBgn0028379 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.00Down
Head6 ± 20 of 4 0.00Down
Eye3 ± 10 of 4 0.02Down
Thoracicoabdominal ganglion5 ± 10 of 4 0.00Down
Salivary gland10 ± 50 of 4 0.06Down
Crop8 ± 10 of 4 0.10Down
Midgut3 ± 10 of 4 0.00Down
Tubule3 ± 00 of 4 0.00Down
Hindgut8 ± 10 of 4 0.10Down
Heart2 ± 00 of 4 0.01Down
Fat body10 ± 61 of 4 0.07Down
Ovary3 ± 10 of 4 0.00Down
Testis1604 ± 94 of 410.20Up
Male accessory glands10 ± 30 of 4 0.10Down
Virgin spermatheca7 ± 20 of 4 0.05Down
Mated spermatheca10 ± 30 of 4 0.06Down
Adult carcass8 ± 30 of 4 0.10Down
Larval CNS4 ± 30 of 4 0.03Down
Larval Salivary gland2 ± 10 of 4 0.02Down
Larval midgut4 ± 10 of 4 0.03Down
Larval tubule7 ± 10 of 4 0.00Down
Larval hindgut6 ± 00 of 4 0.04Down
Larval fat body216 ± 914 of 4 1.40None
Larval trachea11 ± 151 of 4 0.07Down
Larval carcass5 ± 10 of 4 0.03Down
S2 cells (growing)23 ± 14 of 4 0.15Down
Whole fly157 ± 104 of 4

Looking for FBgn0028379. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime