FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0028381 through 18771 annotations produced 1 hits

caspase-3 protein (decay):

Annotation Number : CG14902
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028381
Gbrowse : chr3R:12324779-12327394 (-) // 100.0 //
Probeset : 1622960_at
Accessions : protein= NP_477462;, nucleotide= NM_058114;
Pathway : 0005737 // cytoplasm // inferred from direct assay
Interpro : 0004197 // cysteine-type endopeptidase activity // inferred from direct assay /// 0004197 // cysteine-type endopeptidase
FlyMine data for FBgn0028381.
BDGP gene expression has embryonic in situ data for decay: 15 pix of staining in 2 body parts.
Homophila reports that CG14902 is a close match (2e-27) to human gene ALPS2;CASP10;MCH4 (NP_116756), a gene associated with Autoimmune lymphoproliferative syndrome, type II, 603909 (3);Gastric cancer, somatic, 137215 (3);Non-Hodgkin lymphoma, somatic, 605027 (3).
VDRC has 3 RNAi stocks for FBgn0028381 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	0 ± 0	0 of 4	0.00	Down
Head	7 ± 1	0 of 4	0.00	Down
Eye	4 ± 1	1 of 4	0.03	Down
Thoracicoabdominal ganglion	0 ± 0	0 of 4	0.00	Down
Salivary gland	8 ± 5	0 of 4	0.05	Down
Crop	9 ± 1	2 of 4	0.10	Down
Midgut	2023 ± 73	4 of 4	12.10	Up
Tubule	877 ± 25	4 of 4	5.30	Up
Hindgut	453 ± 25	4 of 4	2.70	Up
Heart	3 ± 0	0 of 4	0.02	Down
Fat body	6 ± 4	0 of 4	0.04	Down
Ovary	2 ± 0	0 of 4	0.00	Down
Testis	26 ± 0	4 of 4	0.20	Down
Male accessory glands	4 ± 1	0 of 4	0.00	Down
Virgin spermatheca	3 ± 1	0 of 4	0.02	Down
Mated spermatheca	3 ± 0	0 of 4	0.02	Down
Adult carcass	9 ± 3	0 of 4	0.10	Down
Larval CNS	3 ± 1	0 of 4	0.02	Down
Larval Salivary gland	10 ± 2	3 of 4	0.06	Down
Larval midgut	2009 ± 62	4 of 4	12.03	Up
Larval tubule	750 ± 23	4 of 4	4.50	Up
Larval hindgut	455 ± 34	4 of 4	2.73	Up
Larval fat body	445 ± 61	4 of 4	2.70	Up
Larval trachea	4 ± 2	0 of 4	0.03	Down
Larval carcass	4 ± 1	0 of 4	0.03	Down
S2 cells (growing)	1 ± 1	0 of 4	0.01	Down
Whole fly	167 ± 13	4 of 4

Looking for FBgn0028381. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720