Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028394 through 18771 annotations produced 2 hits



(CG17834):

Annotation Number : CG17834
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028394
Gbrowse : chr2L:8529142-8541462 (+) // 100.0 //
Probeset : 1630097_s_at
Accessions : protein= NP_609242; /// NP_723403; /// NP_723404; /// NP_723405;, nucleotide= NM_135398; /// NM_164827; /// NM_164828; /// NM_164829;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0028394.
BDGP gene expression has embryonic in situ data for CG17834: 12 pix of staining in 7 body parts.
BioGrid reports that CG17834 interacts with CG7393 .
VDRC has 3 RNAi stocks for FBgn0028394 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 10 of 4 0.20Down
Head36 34 of 4 1.10None
Eye8 03 of 4 0.25Down
Thoracicoabdominal ganglion2 00 of 4 0.10Down
Salivary gland16 50 of 4 0.47Down
Crop31 14 of 4 0.90None
Midgut128 124 of 4 3.70Up
Tubule103 114 of 4 3.00Up
Hindgut186 74 of 4 5.30Up
Heart4 12 of 4 0.14Down
Fat body7 40 of 4 0.20Down
Ovary43 24 of 4 1.20None
Testis18 24 of 4 0.50Down
Male accessory glands82 34 of 4 2.40Up
Virgin spermatheca14 32 of 4 0.42Down
Mated spermatheca15 11 of 4 0.45Down
Adult carcass33 43 of 4 1.00None
Larval CNS11 33 of 4 0.33Down
Larval Salivary gland32 94 of 4 0.92None
Larval midgut84 154 of 4 2.41Up
Larval tubule293 74 of 4 8.40Up
Larval hindgut436 314 of 412.49Up
Larval fat body9 12 of 4 0.30Down
Larval trachea84 144 of 4 2.41Up
Larval carcass75 254 of 4 2.16None
S2 cells (growing)4 10 of 4 0.13Down
Whole fly35 34 of 4



(CG17834):

Annotation Number : CG17834
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028394
Gbrowse : chr2L:8535800-8537932 (+) // 100.0 //
Probeset : 1626011_at
Accessions : protein= NP_609242; /// NP_723403; /// NP_723404; /// NP_723405;, nucleotide= NM_135398; /// NM_164827; /// NM_164828; /// NM_164829;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0028394.
BDGP gene expression has embryonic in situ data for CG17834: 12 pix of staining in 7 body parts.
BioGrid reports that CG17834 interacts with CG7393 .
VDRC has 3 RNAi stocks for FBgn0028394 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 14 of 4 0.20Down
Head43 44 of 4 1.10None
Eye26 14 of 4 0.64Down
Thoracicoabdominal ganglion9 03 of 4 0.20Down
Salivary gland114 44 of 4 2.78Up
Crop260 94 of 4 6.30Up
Midgut80 04 of 4 2.00Up
Tubule256 104 of 4 6.20Up
Hindgut440 84 of 410.70Up
Heart24 24 of 4 0.59Down
Fat body22 44 of 4 0.54Down
Ovary28 24 of 4 0.70Down
Testis23 14 of 4 0.60Down
Male accessory glands100 44 of 4 2.50Up
Virgin spermatheca109 34 of 4 2.66Up
Mated spermatheca141 54 of 4 3.45Up
Adult carcass33 14 of 4 0.80Down
Larval CNS15 24 of 4 0.37Down
Larval Salivary gland79 24 of 4 1.94Up
Larval midgut112 24 of 4 2.73Up
Larval tubule541 134 of 413.20Up
Larval hindgut454 264 of 411.07Up
Larval fat body51 44 of 4 1.30None
Larval trachea170 94 of 4 4.16Up
Larval carcass48 34 of 4 1.17None
S2 cells (growing)15 04 of 4 0.37Down
Whole fly41 14 of 4

Looking for FBgn0028394. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime