FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0028394 through 18771 annotations produced 2 hits

(CG17834):

Annotation Number : CG17834
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028394
Gbrowse : chr2L:8529142-8541462 (+) // 100.0 //
Probeset : 1630097_s_at
Accessions : protein= NP_609242; /// NP_723403; /// NP_723404; /// NP_723405;, nucleotide= NM_135398; /// NM_164827; /// NM_164828; /// NM_164829;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0028394.
BDGP gene expression has embryonic in situ data for CG17834: 12 pix of staining in 7 body parts.
BioGrid reports that CG17834 interacts with CG7393 .
VDRC has 3 RNAi stocks for FBgn0028394 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 1	0 of 4	0.20	Down
Head	36 ± 3	4 of 4	1.10	None
Eye	8 ± 0	3 of 4	0.25	Down
Thoracicoabdominal ganglion	2 ± 0	0 of 4	0.10	Down
Salivary gland	16 ± 5	0 of 4	0.47	Down
Crop	31 ± 1	4 of 4	0.90	None
Midgut	128 ± 12	4 of 4	3.70	Up
Tubule	103 ± 11	4 of 4	3.00	Up
Hindgut	186 ± 7	4 of 4	5.30	Up
Heart	4 ± 1	2 of 4	0.14	Down
Fat body	7 ± 4	0 of 4	0.20	Down
Ovary	43 ± 2	4 of 4	1.20	None
Testis	18 ± 2	4 of 4	0.50	Down
Male accessory glands	82 ± 3	4 of 4	2.40	Up
Virgin spermatheca	14 ± 3	2 of 4	0.42	Down
Mated spermatheca	15 ± 1	1 of 4	0.45	Down
Adult carcass	33 ± 4	3 of 4	1.00	None
Larval CNS	11 ± 3	3 of 4	0.33	Down
Larval Salivary gland	32 ± 9	4 of 4	0.92	None
Larval midgut	84 ± 15	4 of 4	2.41	Up
Larval tubule	293 ± 7	4 of 4	8.40	Up
Larval hindgut	436 ± 31	4 of 4	12.49	Up
Larval fat body	9 ± 1	2 of 4	0.30	Down
Larval trachea	84 ± 14	4 of 4	2.41	Up
Larval carcass	75 ± 25	4 of 4	2.16	None
S2 cells (growing)	4 ± 1	0 of 4	0.13	Down
Whole fly	35 ± 3	4 of 4

(CG17834):

Annotation Number : CG17834
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028394
Gbrowse : chr2L:8535800-8537932 (+) // 100.0 //
Probeset : 1626011_at
Accessions : protein= NP_609242; /// NP_723403; /// NP_723404; /// NP_723405;, nucleotide= NM_135398; /// NM_164827; /// NM_164828; /// NM_164829;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0028394.
BDGP gene expression has embryonic in situ data for CG17834: 12 pix of staining in 7 body parts.
BioGrid reports that CG17834 interacts with CG7393 .
VDRC has 3 RNAi stocks for FBgn0028394 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	9 ± 1	4 of 4	0.20	Down
Head	43 ± 4	4 of 4	1.10	None
Eye	26 ± 1	4 of 4	0.64	Down
Thoracicoabdominal ganglion	9 ± 0	3 of 4	0.20	Down
Salivary gland	114 ± 4	4 of 4	2.78	Up
Crop	260 ± 9	4 of 4	6.30	Up
Midgut	80 ± 0	4 of 4	2.00	Up
Tubule	256 ± 10	4 of 4	6.20	Up
Hindgut	440 ± 8	4 of 4	10.70	Up
Heart	24 ± 2	4 of 4	0.59	Down
Fat body	22 ± 4	4 of 4	0.54	Down
Ovary	28 ± 2	4 of 4	0.70	Down
Testis	23 ± 1	4 of 4	0.60	Down
Male accessory glands	100 ± 4	4 of 4	2.50	Up
Virgin spermatheca	109 ± 3	4 of 4	2.66	Up
Mated spermatheca	141 ± 5	4 of 4	3.45	Up
Adult carcass	33 ± 1	4 of 4	0.80	Down
Larval CNS	15 ± 2	4 of 4	0.37	Down
Larval Salivary gland	79 ± 2	4 of 4	1.94	Up
Larval midgut	112 ± 2	4 of 4	2.73	Up
Larval tubule	541 ± 13	4 of 4	13.20	Up
Larval hindgut	454 ± 26	4 of 4	11.07	Up
Larval fat body	51 ± 4	4 of 4	1.30	None
Larval trachea	170 ± 9	4 of 4	4.16	Up
Larval carcass	48 ± 3	4 of 4	1.17	None
S2 cells (growing)	15 ± 0	4 of 4	0.37	Down
Whole fly	41 ± 1	4 of 4

Looking for FBgn0028394. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720