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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028396 through 18771 annotations produced 1 hits



Turandot A (TotA):

Annotation Number : CG31509
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028396
Gbrowse : chr3R:16696757-16697427 (+) // 100.0 //
Probeset : 1635549_at
Accessions : protein= NP_536778;, nucleotide= NM_080517;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred fr
FlyMine data for FBgn0028396.
VDRC has 3 RNAi stocks for FBgn0028396 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain235 244 of 4 0.20None
Head3847 3634 of 4 2.90Up
Eye4698 10454 of 4 3.59Up
Thoracicoabdominal ganglion234 384 of 4 0.20None
Salivary gland57 143 of 4 0.04Down
Crop184 244 of 4 0.10None
Midgut6 10 of 4 0.00Down
Tubule175 743 of 4 0.10Down
Hindgut162 534 of 4 0.10None
Heart5110 6224 of 4 3.91Up
Fat body5915 7204 of 4 4.52Up
Ovary1 00 of 4 0.00Down
Testis11 04 of 4 0.00Down
Male accessory glands20 21 of 4 0.00Down
Virgin spermatheca5382 5244 of 4 4.11Up
Mated spermatheca4989 5324 of 4 3.81Up
Adult carcass3773 2214 of 4 2.90Up
Larval CNS9 14 of 4 0.01Down
Larval Salivary gland1265 1124 of 4 0.97None
Larval midgut23 64 of 4 0.02Down
Larval tubule131 464 of 4 0.10None
Larval hindgut257 1114 of 4 0.20None
Larval fat body8866 9584 of 4 6.80Up
Larval trachea260 1924 of 4 0.20None
Larval carcass151 464 of 4 0.12None
S2 cells (growing)15 04 of 4 0.01Down
Whole fly1308 3784 of 4

Looking for FBgn0028396. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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