FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0028400 through 18771 annotations produced 1 hits

synaptotagmin IV (Syt4):

Annotation Number : CG10047
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028400
Gbrowse : chr3R:3091782-3096533 (+) // 100.0 //
Probeset : 1641475_at
Accessions : protein= NP_477464;, nucleotide= NM_058116;
Pathway : 0005886 // plasma membrane // non-traceable author statement /// 0008021 // synaptic vesicle // inferred from electronic
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0028400.
BDGP gene expression has embryonic in situ data for SytIV: 15 pix of staining in 8 body parts.
Homophila reports that CG10047 is a close match (5e-14) to human gene PKCC;PKCG;PRKCG;SCA14 (NP_002730), a gene associated with Spinocerebellar ataxia 14, 605361 (3).
BioGrid reports that CG10047 interacts with CG9205 CG3139 .
TRiP has 2 RNAi stocks for FBgn0028400 available for purchase.
VDRC has 1 RNAi stocks for FBgn0028400 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2527 ± 38	4 of 4	20.70	Up
Head	1063 ± 53	4 of 4	8.70	Up
Eye	1046 ± 57	4 of 4	8.59	Up
Thoracicoabdominal ganglion	2563 ± 43	4 of 4	21.00	Up
Salivary gland	6 ± 3	0 of 4	0.05	Down
Crop	4 ± 1	0 of 4	0.00	Down
Midgut	2 ± 0	0 of 4	0.00	Down
Tubule	1 ± 0	0 of 4	0.00	Down
Hindgut	2 ± 1	0 of 4	0.00	Down
Heart	13 ± 0	4 of 4	0.11	Down
Fat body	6 ± 2	2 of 4	0.05	Down
Ovary	0 ± 0	0 of 4	0.00	Down
Testis	12 ± 0	4 of 4	0.10	Down
Male accessory glands	0 ± 0	0 of 4	0.00	Down
Virgin spermatheca	2 ± 1	0 of 4	0.02	Down
Mated spermatheca	3 ± 1	2 of 4	0.03	Down
Adult carcass	63 ± 2	4 of 4	0.50	Down
Larval CNS	1212 ± 72	4 of 4	9.95	Up
Larval Salivary gland	4 ± 1	0 of 4	0.04	Down
Larval midgut	5 ± 1	0 of 4	0.04	Down
Larval tubule	1 ± 0	0 of 4	0.00	Down
Larval hindgut	3 ± 0	0 of 4	0.03	Down
Larval fat body	3 ± 1	0 of 4	0.00	Down
Larval trachea	22 ± 26	4 of 4	0.19	Down
Larval carcass	17 ± 1	4 of 4	0.14	Down
S2 cells (growing)	2 ± 0	0 of 4	0.02	Down
Whole fly	121 ± 10	4 of 4

Looking for FBgn0028400. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720