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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028402 through 18771 annotations produced 1 hits



Sex-lethal interactor (Sin):

Annotation Number : CG10582
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028402
Gbrowse : chr3L:21024914-21026653 (+) // 100.0 //
Probeset : 1635970_at
Accessions : protein= NP_001163486; /// NP_524192;, nucleotide= NM_001170015; /// NM_079468;
Pathway : via spliceosome // inferred by curator /// 0006350 // transcription // inferred from electronic annotation"
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005685 // U1 snRNP // non-traceable author statement
FlyMine data for FBgn0028402.
BioGrid reports that CG10582 interacts with CG2047 CG5147 .
VDRC has 3 RNAi stocks for FBgn0028402 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain67 ± 34 of 4 0.60Down
Head77 ± 24 of 4 0.70Down
Eye64 ± 24 of 4 0.60Down
Thoracicoabdominal ganglion62 ± 24 of 4 0.60Down
Salivary gland46 ± 24 of 4 0.43Down
Crop77 ± 64 of 4 0.70Down
Midgut53 ± 14 of 4 0.50Down
Tubule112 ± 14 of 4 1.10Up
Hindgut62 ± 34 of 4 0.60Down
Heart68 ± 64 of 4 0.64Down
Fat body86 ± 234 of 4 0.82None
Ovary209 ± 54 of 4 2.00Up
Testis75 ± 24 of 4 0.70Down
Male accessory glands102 ± 74 of 4 1.00None
Virgin spermatheca65 ± 34 of 4 0.61Down
Mated spermatheca68 ± 44 of 4 0.65Down
Adult carcass77 ± 14 of 4 0.70Down
Larval CNS184 ± 94 of 4 1.73Up
Larval Salivary gland122 ± 54 of 4 1.16None
Larval midgut59 ± 10 of 4 0.56Down
Larval tubule98 ± 54 of 4 0.90None
Larval hindgut98 ± 64 of 4 0.92None
Larval fat body112 ± 34 of 4 1.10None
Larval trachea121 ± 154 of 4 1.15None
Larval carcass107 ± 154 of 4 1.01None
S2 cells (growing)172 ± 54 of 4 1.62Up
Whole fly106 ± 54 of 4

Looking for FBgn0028402. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime