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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028406 through 18771 annotations produced 1 hits



Caspase-activated DNase (Drep-4):

Annotation Number : CG9414
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028406
Gbrowse : chr2L:13283886-13286409 (-) // 100.0 //
Probeset : 1624326_at
Accessions : protein= NP_609631;, nucleotide= NM_135787;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0004536 // deoxyribonuclease activity // inferred from sequence or structural similarity /// 0005515 // protein binding
FlyMine data for FBgn0028406.
BioGrid reports that CG9414 interacts with CG9414 .
VDRC has 1 RNAi stocks for FBgn0028406 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain352 84 of 4 2.90Up
Head143 64 of 4 1.20Up
Eye57 34 of 4 0.48Down
Thoracicoabdominal ganglion346 84 of 4 2.90Up
Salivary gland72 74 of 4 0.60Down
Crop77 24 of 4 0.60Down
Midgut44 14 of 4 0.40Down
Tubule46 14 of 4 0.40Down
Hindgut48 34 of 4 0.40Down
Heart65 44 of 4 0.54Down
Fat body99 94 of 4 0.82Down
Ovary234 44 of 4 1.90Up
Testis12 04 of 4 0.10Down
Male accessory glands102 24 of 4 0.80Down
Virgin spermatheca121 94 of 4 1.01None
Mated spermatheca124 54 of 4 1.02None
Adult carcass61 24 of 4 0.50Down
Larval CNS168 204 of 4 1.39Up
Larval Salivary gland161 84 of 4 1.34Up
Larval midgut56 34 of 4 0.46Down
Larval tubule246 114 of 4 2.00Up
Larval hindgut74 74 of 4 0.62Down
Larval fat body112 84 of 4 0.90None
Larval trachea96 84 of 4 0.80Down
Larval carcass87 64 of 4 0.72Down
S2 cells (growing)94 24 of 4 0.78Down
Whole fly121 54 of 4

Looking for FBgn0028406. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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