FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0028407 through 18771 annotations produced 2 hits

Rep3 (Drep-3):

Annotation Number : CG8364
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028407
Gbrowse : chr2R:7940448-7950374 (+) // 100.0 //
Probeset : 1622957_s_at
Accessions : protein= NP_610722; /// NP_610723;, nucleotide= NM_136878; /// NM_136879;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0028407.
BDGP gene expression has embryonic in situ data for Rep3: 4 pix of staining in 1 body parts.
BioGrid reports that CG8364 interacts with CG8548 CG9216 CG9414 .
TRiP has 1 RNAi stocks for FBgn0028407 available for purchase.
VDRC has 2 RNAi stocks for FBgn0028407 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	568 ± 18	4 of 4	31.00	Up
Head	111 ± 5	4 of 4	6.10	Up
Eye	17 ± 1	4 of 4	0.98	None
Thoracicoabdominal ganglion	315 ± 2	4 of 4	17.20	Up
Salivary gland	26 ± 1	2 of 4	1.42	Up
Crop	11 ± 1	1 of 4	0.60	Down
Midgut	6 ± 1	0 of 4	0.30	Down
Tubule	8 ± 0	0 of 4	0.50	Down
Hindgut	5 ± 0	0 of 4	0.30	Down
Heart	1 ± 0	0 of 4	0.07	Down
Fat body	23 ± 8	4 of 4	1.27	None
Ovary	1 ± 0	0 of 4	0.10	Down
Testis	89 ± 5	4 of 4	4.90	Up
Male accessory glands	11 ± 2	0 of 4	0.60	None
Virgin spermatheca	19 ± 2	4 of 4	1.04	None
Mated spermatheca	20 ± 6	4 of 4	1.14	None
Adult carcass	6 ± 1	0 of 4	0.30	Down
Larval CNS	208 ± 25	4 of 4	11.37	Up
Larval Salivary gland	5 ± 0	0 of 4	0.27	Down
Larval midgut	4 ± 1	0 of 4	0.25	Down
Larval tubule	7 ± 1	1 of 4	0.40	Down
Larval hindgut	5 ± 1	0 of 4	0.30	Down
Larval fat body	9 ± 1	1 of 4	0.50	Down
Larval trachea	5 ± 2	0 of 4	0.29	Down
Larval carcass	9 ± 1	0 of 4	0.50	Down
S2 cells (growing)	2 ± 0	0 of 4	0.16	Down
Whole fly	18 ± 1	4 of 4

Rep3 (Drep-3):

Annotation Number : CT32428
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028407
Gbrowse : chr2R:7940507-7940850 (+) // 100.0 //
Probeset : 1629960_s_at
Accessions : protein= NP_610722; /// NP_610723;, nucleotide= NM_136878; /// NM_136879;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0028407.
BDGP gene expression has embryonic in situ data for Rep3: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0028407 available for purchase.
VDRC has 2 RNAi stocks for FBgn0028407 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 1	0 of 4	0.20	Down
Head	5 ± 1	0 of 4	0.50	Down
Eye	1 ± 0	0 of 4	0.10	Down
Thoracicoabdominal ganglion	3 ± 1	0 of 4	0.30	Down
Salivary gland	5 ± 2	0 of 4	0.50	None
Crop	5 ± 1	0 of 4	0.50	Down
Midgut	3 ± 1	0 of 4	0.30	Down
Tubule	4 ± 1	0 of 4	0.40	Down
Hindgut	5 ± 1	0 of 4	0.50	Down
Heart	0 ± 0	0 of 4	0.07	Down
Fat body	1 ± 0	0 of 4	0.11	Down
Ovary	1 ± 0	0 of 4	0.10	Down
Testis	108 ± 6	4 of 4	9.70	Up
Male accessory glands	2 ± 0	0 of 4	0.20	Down
Virgin spermatheca	2 ± 1	0 of 4	0.22	Down
Mated spermatheca	1 ± 0	0 of 4	0.10	Down
Adult carcass	2 ± 1	0 of 4	0.20	Down
Larval CNS	2 ± 2	0 of 4	0.24	Down
Larval Salivary gland	1 ± 0	0 of 4	0.11	Down
Larval midgut	1 ± 0	0 of 4	0.11	Down
Larval tubule	4 ± 1	0 of 4	0.40	Down
Larval hindgut	2 ± 0	0 of 4	0.19	Down
Larval fat body	7 ± 5	1 of 4	0.70	None
Larval trachea	1 ± 0	0 of 4	0.09	Down
Larval carcass	1 ± 0	0 of 4	0.18	Down
S2 cells (growing)	2 ± 0	0 of 4	0.23	Down
Whole fly	11 ± 0	0 of 4

Looking for FBgn0028407. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720