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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028407 through 18771 annotations produced 2 hits



Rep3 (Drep-3):

Annotation Number : CG8364
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028407
Gbrowse : chr2R:7940448-7950374 (+) // 100.0 //
Probeset : 1622957_s_at
Accessions : protein= NP_610722; /// NP_610723;, nucleotide= NM_136878; /// NM_136879;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0028407.
BDGP gene expression has embryonic in situ data for Rep3: 4 pix of staining in 1 body parts.
BioGrid reports that CG8364 interacts with CG8548 CG9216 CG9414 .
TRiP has 1 RNAi stocks for FBgn0028407 available for purchase.
VDRC has 2 RNAi stocks for FBgn0028407 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain568 184 of 431.00Up
Head111 54 of 4 6.10Up
Eye17 14 of 4 0.98None
Thoracicoabdominal ganglion315 24 of 417.20Up
Salivary gland26 12 of 4 1.42Up
Crop11 11 of 4 0.60Down
Midgut6 10 of 4 0.30Down
Tubule8 00 of 4 0.50Down
Hindgut5 00 of 4 0.30Down
Heart1 00 of 4 0.07Down
Fat body23 84 of 4 1.27None
Ovary1 00 of 4 0.10Down
Testis89 54 of 4 4.90Up
Male accessory glands11 20 of 4 0.60None
Virgin spermatheca19 24 of 4 1.04None
Mated spermatheca20 64 of 4 1.14None
Adult carcass6 10 of 4 0.30Down
Larval CNS208 254 of 411.37Up
Larval Salivary gland5 00 of 4 0.27Down
Larval midgut4 10 of 4 0.25Down
Larval tubule7 11 of 4 0.40Down
Larval hindgut5 10 of 4 0.30Down
Larval fat body9 11 of 4 0.50Down
Larval trachea5 20 of 4 0.29Down
Larval carcass9 10 of 4 0.50Down
S2 cells (growing)2 00 of 4 0.16Down
Whole fly18 14 of 4



Rep3 (Drep-3):

Annotation Number : CT32428
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028407
Gbrowse : chr2R:7940507-7940850 (+) // 100.0 //
Probeset : 1629960_s_at
Accessions : protein= NP_610722; /// NP_610723;, nucleotide= NM_136878; /// NM_136879;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0028407.
BDGP gene expression has embryonic in situ data for Rep3: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0028407 available for purchase.
VDRC has 2 RNAi stocks for FBgn0028407 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 10 of 4 0.20Down
Head5 10 of 4 0.50Down
Eye1 00 of 4 0.10Down
Thoracicoabdominal ganglion3 10 of 4 0.30Down
Salivary gland5 20 of 4 0.50None
Crop5 10 of 4 0.50Down
Midgut3 10 of 4 0.30Down
Tubule4 10 of 4 0.40Down
Hindgut5 10 of 4 0.50Down
Heart0 00 of 4 0.07Down
Fat body1 00 of 4 0.11Down
Ovary1 00 of 4 0.10Down
Testis108 64 of 4 9.70Up
Male accessory glands2 00 of 4 0.20Down
Virgin spermatheca2 10 of 4 0.22Down
Mated spermatheca1 00 of 4 0.10Down
Adult carcass2 10 of 4 0.20Down
Larval CNS2 20 of 4 0.24Down
Larval Salivary gland1 00 of 4 0.11Down
Larval midgut1 00 of 4 0.11Down
Larval tubule4 10 of 4 0.40Down
Larval hindgut2 00 of 4 0.19Down
Larval fat body7 51 of 4 0.70None
Larval trachea1 00 of 4 0.09Down
Larval carcass1 00 of 4 0.18Down
S2 cells (growing)2 00 of 4 0.23Down
Whole fly11 00 of 4

Looking for FBgn0028407. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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