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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028410 through 18771 annotations produced 1 hits



Pk34A (Pk34A):

Annotation Number : CG5182
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028410
Gbrowse : chr2L:13158809-13160118 (+) // 100.0 //
Probeset : 1635925_at
Accessions : protein= NP_609603;, nucleotide= NM_135759;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0028410.
Homophila reports that CG5182 is a close match (2e-11) to human gene JAK3;JAKL (NP_000206), a gene associated with SCID, autosomal recessive, T-negative/B-positive type (3).
VDRC has 2 RNAi stocks for FBgn0028410 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head1 00 of 4 0.10Down
Eye1 00 of 4 0.14Down
Thoracicoabdominal ganglion1 00 of 4 0.10Down
Salivary gland4 10 of 4 0.47None
Crop1 00 of 4 0.10Down
Midgut1 00 of 4 0.10Down
Tubule3 00 of 4 0.40Down
Hindgut2 00 of 4 0.20Down
Heart0 00 of 4 0.07Down
Fat body7 50 of 4 0.76None
Ovary0 00 of 4 0.10Down
Testis110 44 of 411.70Up
Male accessory glands2 00 of 4 0.20Down
Virgin spermatheca8 10 of 4 0.86None
Mated spermatheca6 20 of 4 0.67None
Adult carcass5 30 of 4 0.60None
Larval CNS2 10 of 4 0.27Down
Larval Salivary gland3 20 of 4 0.41None
Larval midgut2 10 of 4 0.27Down
Larval tubule3 10 of 4 0.40None
Larval hindgut1 00 of 4 0.20Down
Larval fat body18 71 of 4 1.90None
Larval trachea2 10 of 4 0.22Down
Larval carcass1 00 of 4 0.16Down
S2 cells (growing)2 00 of 4 0.23Down
Whole fly9 20 of 4

Looking for FBgn0028410. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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