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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0028412 through 18771 annotations produced 1 hits


Mst33A (Mst33A):

Annotation Number : CG6541
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028412
Gbrowse : chr2L:11585429-11586833 (-) // 100.0 //
Probeset : 1624562_s_at
Accessions : protein= NP_477465; /// NP_602306;, nucleotide= NM_058117; /// NM_134430;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0028412.
BioGrid reports that CG6541 interacts with CG7967 CG9527 CG6843 .
VDRC has 3 RNAi stocks for FBgn0028412 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.00Down
Head2 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion3 ± 20 of 4 0.00Down
Salivary gland2 ± 00 of 4 0.01Down
Crop2 ± 00 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.00Down
Hindgut2 ± 00 of 4 0.00Down
Heart1 ± 00 of 4 0.01Down
Fat body3 ± 10 of 4 0.02Down
Ovary1 ± 00 of 4 0.00Down
Testis2029 ± 704 of 410.10Up
Male accessory glands21 ± 50 of 4 0.10Down
Virgin spermatheca3 ± 10 of 4 0.02Down
Mated spermatheca3 ± 20 of 4 0.02Down
Adult carcass10 ± 00 of 4 0.10Down
Larval CNS1 ± 10 of 4 0.01Down
Larval Salivary gland2 ± 10 of 4 0.01Down
Larval midgut1 ± 00 of 4 0.01Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut2 ± 00 of 4 0.01Down
Larval fat body353 ± 2054 of 4 1.80None
Larval trachea9 ± 131 of 4 0.05Down
Larval carcass4 ± 10 of 4 0.02Down
S2 cells (growing)2 ± 00 of 4 0.01Down
Whole fly200 ± 234 of 4

Looking for FBgn0028412. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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