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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0028416 through 18771 annotations produced 1 hits


Met75Ca /// Met75Cb (Met75Ca /// Met75Cb):

Annotation Number : CG18064
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028415 /// FBgn0028416
Gbrowse : chr3L:18462474-18462699 (-) // 100.0 // /// chr3L:18465240-18465465 (-) // 99.56 //
Probeset : 1623318_s_at
Accessions : protein= NP_651980; /// NP_730336;, nucleotide= NM_143723; /// NM_168765;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0028415 /// FBgn0028416.
BioGrid reports that CG18064 interacts with CG4835 CG30483 CG3832 CG5094 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 13 of 4 0.00Down
Head6 ± 21 of 4 0.00Down
Eye14 ± 33 of 4 0.00Down
Thoracicoabdominal ganglion12 ± 04 of 4 0.00Down
Salivary gland33 ± 42 of 4 0.01Down
Crop10 ± 12 of 4 0.00Down
Midgut23 ± 63 of 4 0.00Down
Tubule10 ± 02 of 4 0.00Down
Hindgut12 ± 04 of 4 0.00Down
Heart38 ± 104 of 4 0.01Down
Fat body36 ± 324 of 4 0.01Down
Ovary5 ± 01 of 4 0.00Down
Testis783 ± 3074 of 4 0.20Down
Male accessory glands9018 ± 3524 of 4 2.20Up
Virgin spermatheca12 ± 14 of 4 0.00Down
Mated spermatheca13 ± 14 of 4 0.00Down
Adult carcass24 ± 44 of 4 0.00Down
Larval CNS7 ± 14 of 4 0.00Down
Larval Salivary gland14 ± 13 of 4 0.00Down
Larval midgut96 ± 334 of 4 0.02Down
Larval tubule5 ± 11 of 4 0.00Down
Larval hindgut26 ± 64 of 4 0.01Down
Larval fat body18 ± 14 of 4 0.00Down
Larval trachea18 ± 114 of 4 0.00Down
Larval carcass16 ± 04 of 4 0.00Down
S2 cells (growing)7 ± 11 of 4 0.00Down
Whole fly4078 ± 3324 of 4

Looking for FBgn0028416. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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