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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028424 through 18771 annotations produced 1 hits



Juvenile hormone-inducible protein 26 (JhI-26):

Annotation Number : CG3767
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028424
Gbrowse : chr2R:12176829-12178835 (+) // 100.0 //
Probeset : 1632802_at
Accessions : protein= NP_523761;, nucleotide= NM_079037;
FlyMine data for FBgn0028424.
BDGP gene expression has embryonic in situ data for JhI-26: 29 pix of staining in 2 body parts.
VDRC has 3 RNAi stocks for FBgn0028424 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain117 ± 54 of 4 1.00None
Head218 ± 124 of 4 1.80Up
Eye125 ± 14 of 4 1.04None
Thoracicoabdominal ganglion128 ± 44 of 4 1.10None
Salivary gland189 ± 164 of 4 1.57Up
Crop292 ± 84 of 4 2.40Up
Midgut841 ± 224 of 4 7.00Up
Tubule2353 ± 474 of 419.50Up
Hindgut233 ± 64 of 4 1.90Up
Heart473 ± 384 of 4 3.93Up
Fat body55 ± 74 of 4 0.46Down
Ovary12 ± 04 of 4 0.10Down
Testis17 ± 24 of 4 0.10Down
Male accessory glands539 ± 334 of 4 4.50Up
Virgin spermatheca52 ± 14 of 4 0.44Down
Mated spermatheca59 ± 34 of 4 0.49Down
Adult carcass178 ± 94 of 4 1.50Up
Larval CNS30 ± 54 of 4 0.25Down
Larval Salivary gland54 ± 54 of 4 0.45Down
Larval midgut1567 ± 504 of 413.00Up
Larval tubule1081 ± 564 of 4 9.00Up
Larval hindgut177 ± 154 of 4 1.47None
Larval fat body37 ± 104 of 4 0.30Down
Larval trachea179 ± 624 of 4 1.49None
Larval carcass152 ± 94 of 4 1.26None
S2 cells (growing)273 ± 74 of 4 2.27Up
Whole fly120 ± 174 of 4

Looking for FBgn0028424. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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